Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02458 ATGGAGGAGGAAGAGCATGAGGTGTACGGTGGTGAGATCCCCGACGTCGGAGAGATGGAAGGAGACGTCGACCCTCACCATGACCACGCCGACGTTGACATGTCCGCTGCCGACGAGTTGGATGAGATGAAGAAGCGCTTGAAGGAAATGGAAGAGGAAGCCGCGGCCCTTCGTGAAATGCAAGCCAAGGTTGAGAAGGAGATGGGCGCTGTTCAAGATCCTGCTAGTGTAGCTGCTTCACAGGCCAACAAGGAGGAGGCAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAACAACACTTTCAATCATGTGGTACAGTGAACAGGGTTACTATCCTGACTGACAAATTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTCCTTGAGACTGAAGCTATTCAAGAAGCTCTTCTACTGAATGAATCTGAATTACATGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACATGGGACATCAATTCAGGAGGCCATATCCTCCTCCTTACTTTTACTCCCCTTATGGATATGGAAAGTTTCCCAGGTTTAGAAGGCCTGGTCGGTACATGCCATACTATTAG 657 0.4764 MEEEEHEVYGGEIPDVGEMEGDVDPHHDHADVDMSAADELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASVAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETEAIQEALLLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGHQFRRPYPPPYFYSPYGYGKFPRFRRPGRYMPYY. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02458 218 MobiDBLite consensus disorder prediction 1 31 - -
Seca5g02458 218 SUPERFAMILY RNA-binding domain, RBD 79 185 IPR035979 GO:0003676
Seca5g02458 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 5 178 - -
Seca5g02458 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Seca5g02458 218 FunFam Polyadenylate-binding protein 1 28 162 - -
Seca5g02458 218 CDD RRM_II_PABPs 91 161 - -
Seca5g02458 218 Gene3D - 26 162 IPR012677 -
Seca5g02458 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Seca5g02458 218 Coils Coil 33 67 - -
Seca5g02458 218 SMART rrm1_1 91 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02458 Seca-Chr5 68559146 68565445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02458 87 161 Eukaryotic Initiation Factors Gene Family AT2G36660 35.526 3.07e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02458 K14396 - jre:109014561 342.043