LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02448	ATGAGTGCAAACAAGCTGCAAGAGCATATCAATGTGCCTGTTATTTTTTATCATGATCTCATAGGGCCCCCCTCCCCGAGTTGCTATGTCGTACGCCCCTGGGTGCAAAGCGGCGATCCTGAGTGCAAAATAGGTTTAGCAAGAAAAAAAAGGAGAGTGGGAGAAAGTGGGAGAAAGAAGAAGGCTTGGGTAGAGGCTTCCCCATCACCTCCTAGCTTGGATCTCCATTATCCTCCTCCTCCTCCATTGTTGCTCAATTTGAGGGAACTTCTAGCTAATGTTCGGGGAAAGATGGAGCTCTTGGAGTGGACTCACCAACTCCCAGTGGTCAAGAGGAATTTGGTTAAGTTGAAAATTGGGAAATATCCAATTTTTAGGGGAAACTCTGCCGGATTTCCGGTTAAGTTGAAAATTGGGAAATATCAAATTTTTAGGGGAAACTCTGCCGGATTTCCGAGTGAACTTAATAATGGCAGCTACTCATTACTAAAATCTCATTTGCAACGTAAGTTTCTTATTCAGAATTTCCATAGGCTATTTGGAATATATCTAAACATACAATCGTCTAATGTCATGCTTTCTTTACTTATTTTTGTAAGATTTTCCTTCATCAATGAAATTAAAGCTGGGAGAGTTGACTGGAAAATTAAAGTAAGAGTGATCAGTATGTGGACACCATATGATTTTAAGAATCCTGGAGTGATTTCAAGTATGGAAATGATACTTGCTGATGAAAAGGGTCACAGAATTCATGCTACTGTAAAACGTGCATGTTTGGACACACACCCAAACATGATTCAAGAAGGATTTACCTATGAGATGCGCAATTTGGCAGTTGGTCAGTCTGAGCCAAATTTGAAGACAACTAAGCACAAATTCAAGCTCATGTTTATTCAAACAACAAGAGTTATCCCTACAAATGATCACCATATCTCTGTTAACTGTTTTCAATTCCTTTCATTTGATCAAATTATACAAGGTCATGATGATGATGTTATTGGTCATGTTGTTGAGAAAGATGACATTAAGGAAAAGGACAAACAAGGGAAAAAAAGTAAACTTGTTGATGTTGTCCTTGAGGATTTGGACAAGAATCGACTCATCTGCACTCTGTGGGGTAATTTTGCGGACCAAATGTTCAACTATCTCAATACAACAACAGATAACAATGATAGTATTGTTGTCATTTTGCAGCTTGGAAAAAGGAAGAAATTTAATGGACAAGTTGGGATTTCAAATGCGTACAATGGTACTAAATTGCTAATCAACCCGGATGTGGCTGAAGTTACTGCTTGCAAGGAAAAACTTCAAAGTGGGGACTTATCTGTAACTCAAGTAGTAAGCCAAATGTCTTCACAGCAGTCTCTTTCATTTAGTGATGATTTGATTACTTTAAGAAGATTGACTATTTCGGACTTAATAGAAAGCATCCAGATTGCCAATGGATCATTGTTGGCAACCATTATAGAAATAGATCTTGACAAAGATTGGTGGTTTCAATCATGTTCTAAATGTTACAAACATGTTGTCGAGATGGGGACAAAGCATTATTGTGAAAAGTGCAAGATAATTGTTGCTGTCCCAAGGTTTAAAGTGAATGCAACTGTGATTGATGAAACTGGATCAACATGTTTGATCATGTTTGATGCTGCCCTTTCTAAGTTTCTGGGCAAAACTGCTTCTGAGTTACTTGGGGCAAATGATAAGGCAAAAGACAAAGGATATTGTCCCCCTAAGATTGATGCATTGGTGGATAAAGAGTTTTTGTTTAGAGTGGAAGTCTCTGATGCAAACATTCTTTACAATTTCAAAACATACAAAGTCAGGCTCATGACAGATGACAAAGAATCGATTGATCAGTTTAAGATTATGCACTCAATCAAGGATATGGATGAAGATAATGATTACAATGAACAACAAGAAAATTTGACCATACAAGTAGATGATAACATCAAGGATACATCTGAGCAGGAATTGTCAGCCTCTAAAATTGAGTTGTGTCGACAAATTGAAGAAATGTTATCAGACAATGATGGCGAGACTCCATCGAGCAAACCAACTGGGAAGAGATCTATTGATAATGTTGAAATATCACTAGCCATAGATGATGGAGGCACACAGACTTCCAGTACAAAAATCCCCAAAAAAGTGAAGATCAAGATAGAGCCCAAGGACTAA	2178	0.3797	MSANKLQEHINVPVIFYHDLIGPPSPSCYVVRPWVQSGDPECKIGLARKKRRVGESGRKKKAWVEASPSPPSLDLHYPPPPPLLLNLRELLANVRGKMELLEWTHQLPVVKRNLVKLKIGKYPIFRGNSAGFPVKLKIGKYQIFRGNSAGFPSELNNGSYSLLKSHLQRKFLIQNFHRLFGIYLNIQSSNVMLSLLIFVRFSFINEIKAGRVDWKIKVRVISMWTPYDFKNPGVISSMEMILADEKGHRIHATVKRACLDTHPNMIQEGFTYEMRNLAVGQSEPNLKTTKHKFKLMFIQTTRVIPTNDHHISVNCFQFLSFDQIIQGHDDDVIGHVVEKDDIKEKDKQGKKSKLVDVVLEDLDKNRLICTLWGNFADQMFNYLNTTTDNNDSIVVILQLGKRKKFNGQVGISNAYNGTKLLINPDVAEVTACKEKLQSGDLSVTQVVSQMSSQQSLSFSDDLITLRRLTISDLIESIQIANGSLLATIIEIDLDKDWWFQSCSKCYKHVVEMGTKHYCEKCKIIVAVPRFKVNATVIDETGSTCLIMFDAALSKFLGKTASELLGANDKAKDKGYCPPKIDALVDKEFLFRVEVSDANILYNFKTYKVRLMTDDKESIDQFKIMHSIKDMDEDNDYNEQQENLTIQVDDNIKDTSEQELSASKIELCRQIEEMLSDNDGETPSSKPTGKRSIDNVEISLAIDDGGTQTSSTKIPKKVKIKIEPKD.	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02448	725	Gene3D	-	201	309	IPR012340	-
	Seca5g02448	725	Gene3D	-	311	445	IPR012340	-
	Seca5g02448	725	MobiDBLite	consensus disorder prediction	674	693	-	-
	Seca5g02448	725	SUPERFAMILY	Nucleic acid-binding proteins	316	440	IPR012340	-
	Seca5g02448	725	CDD	RPA1_DBD_A_like	215	303	-	-
	Seca5g02448	725	CDD	RPA1_DBD_B_like	331	429	-	-
	Seca5g02448	725	MobiDBLite	consensus disorder prediction	676	691	-	-
	Seca5g02448	725	Gene3D	-	446	628	IPR012340	-
	Seca5g02448	725	PANTHER	OS03G0429900 PROTEIN	199	673	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Seca5g02448	725	SUPERFAMILY	Nucleic acid-binding proteins	201	309	IPR012340	-
	Seca5g02448	725	Pfam	Domain of unknown function DUF223	239	326	IPR003871	-
	Seca5g02448	725	CDD	RPA1_DBD_C	483	614	IPR047192	-
	Seca5g02448	725	MobiDBLite	consensus disorder prediction	699	725	-	-
	Seca5g02448	725	SUPERFAMILY	Nucleic acid-binding proteins	466	604	IPR012340	-
	Seca5g02448	725	Pfam	Replication factor-A C terminal domain	485	597	IPR013955	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02448	Seca-Chr5	68218999	68231321	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02448	214	595	Core DNA Replication Machinery Family	AT5G08020	25.123	8.37e-18	85.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02448	-		-	mtr:120577762	315.464