Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02442 ATGCAAGTGAAAATGAACTTGGTATCTATTCTTTTGCTATTGGCTAGCGTTTGTTGTTTTGCGCTGCCTGAGCTTGATTTACAAGAAGATGCACTATTTGCATTGAAGTTATCATTGAATGCTTCACCCAGCCAGCTTACTAACTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCAATGTTTACTGTGACCAGAATAGCAATGTTGTTCAAGTTTCACTAGCATATATGGGATTCACAGGATACTTGACACCAAGAATAGGAGCTCTAAAAAGCCTTACAACTCTTTCCTTGCAAGGAAACAACATCACCGGTGACATACCAAAAGAAATAGGAAATCTTACAAGCTTGGTCAGATTGGATCTGGAGAACAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACACTGAGTCAAAACAATCTCAATGGGACAATCCCAGAATCACTTGCCATTCTCCCGAGCTTGATCAATGTCCTGCTAGATTCTAATGATCTTAGTGGACAGATTCCAGAGCAGCTATTCAACGTTCTCAAGTACAAGTATGATTTATATTTATTATGTTCCACATTGTTTCACTATATTCCTTATTGCAGTTTCTCTGGTAATAAGTTGAATTGCGGCGTGAATTATCATAATCTTTGCATATCTGATAATGCAGATCAAGGTTCATCAAACAAACCAAAAGTAGGCCTCATAGTTGGATTAGTTATAGGTTTAGCTGTTATCCTTTTTCTTGGTGGCCTGCTGTTTTTCTGGTGCAAGGGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTACATTTGGTCAAATAAAAAGGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTCTATAAAGGTGTTCTAGTTGATGGCATAAAAGTTGCTGTCAAAAGGTTAACTGATTTTGAAAGTCCTGGGGGTGATGCAGCTTTTCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTGGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCCATCGTTTACGAGAACTCAAACCTGGGGAACCTGTTTTGGATTGGGCTACAAGAAAACGAGTGGCTCTGGGAACTGCTCGTGGCCTAGAATATCTTCACGAGCAATGCGATCCTAAGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTGGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTCGATGTTCGACAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACAGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTACTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAAACTGGATACTATTGTTGACAGCAACCTTAACAAAAATTACAACACAGAAGAGGTTGAAATGATTGTACAAGTTGCATTACTTTGCACACAAGCATCGCCAGAGGATCGTCCCGTAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGCTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCACTCGGAGGCAAGACTATGAGAGACTACAAAGGAGATTGGAGTTTGGAGAAGATTCGGTTTATAATCAAGATGCCATTGACTTGTCCGGTGGAAGATGA 1881 0.4067 MQVKMNLVSILLLLASVCCFALPELDLQEDALFALKLSLNASPSQLTNWNKNQVNPCTWSNVYCDQNSNVVQVSLAYMGFTGYLTPRIGALKSLTTLSLQGNNITGDIPKEIGNLTSLVRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLAILPSLINVLLDSNDLSGQIPEQLFNVLKYKYDLYLLCSTLFHYIPYCSFSGNKLNCGVNYHNLCISDNADQGSSNKPKVGLIVGLVIGLAVILFLGGLLFFWCKGYKREVFVDVAGEVDRRITFGQIKRFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLVDGIKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAHRLRELKPGEPVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRQTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDTIVDSNLNKNYNTEEVEMIVQVALLCTQASPEDRPVMSEVVRMLEGEGLAERWEEWQHVEVTRRQDYERLQRRLEFGEDSVYNQDAIDLSGGR. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02442 626 SMART serkin_6 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02442 626 SUPERFAMILY Protein kinase-like (PK-like) 282 578 IPR011009 -
Seca5g02442 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Seca5g02442 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 588 - -
Seca5g02442 626 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02442 626 SUPERFAMILY L domain-like 30 216 - -
Seca5g02442 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 204 - -
Seca5g02442 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Seca5g02442 626 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
Seca5g02442 626 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Seca5g02442 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Seca5g02442 626 Pfam Protein kinase domain 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02442 626 FunFam Somatic embryogenesis receptor-like kinase 1 380 597 - -
Seca5g02442 626 Gene3D Ribonuclease Inhibitor 26 227 IPR032675 -
Seca5g02442 626 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 471 582 - -
Seca5g02442 626 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Seca5g02442 626 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02442 Seca-Chr5 68002020 68008467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02442 4 626 Receptor kinase-like Gene Family AT5G10290 72.727 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca5g02442 Pkinase 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02442 - - gmx:100786654 1023.85