Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02437 ATGTCGAATCCGAATCCGACCCGAATACCTCACCTGCAGGGCGATCCAAATAGCACTGCGGACCCTCAGGTTCCGCTTCGGAACCTCTCCCTTGTTCAGACGAAAATGGATTCTCTGCAGCAGTTCCTATCCCAATCTATCAACTCCAACACTCCCCTCACCAAGGATCAGATCACCGTCGTCTCCAACCAGATCGTCTCCGCCATCCACCAGATCATCGTCAACGGCGCCGCCCTCGTCAATCTCTCCGCCGCCACCGGAGCCTCCTCCGTCTTTCCGCTGAAGACTCCCAGGCCGGAACCCTCCGCCGCCGCCGCCAAGGTCAAACAGGTTCCCGATTCGAAAGTCAAGCTCGCAGAAGAAGACGAAGACGATGACGCCATCGAACTCGACGCCGTGGAATTGCTCGCTGAACACATCCACTTCTGCGAGATTTGCGGGAAAGGTTTCCGGCGCGACGCGAACCTCCGGATGCACATGCGCGCGCACGGGAACCAGTTCAAGACGCCGGAAGCTTTGGCGAAGCCGTCGTTATCGGAGGACGGCGCCGCCGCCGCACGCCGCCGTGTCGCGACACGGTTCTCTTGCCCGTTTGAAGGTTGCAGCCGGAACAAGCTTCACCGGAAGTTCAGGCCGTTGAAATCTGTGATTTGCGTGAAGAATCATTTCAAAAGGAGCCACTGCCCGAAGATGTACTCGTGCAATCGTTGCCACAAGAAGAATTTCTCGGTGCTCTCTGACTTGAAGAGCCACATGAGGCACTGTGGAGAGTCCAAGTGGAAGTGCTCGTGTGGGACCACTTTTTCCAGGAAGGACAAGTTGTTTGGACACATAGCCCTGTTTGAGGGTCACATGCCTGCTCTTGCGTTGGACGAAGAGGAGAAAGGGAAGCAAGTGGTGATGGTGGAGGAAAGTGAAGATCCAAAAAGTGAATTGGGTAGTTCTTTTGTGAATGATGATGGGTTGCCCGAAGAGTTCTTTGATGATTTTGGTTCCATTGATAACTATTGTTTGCAGGAAGTCTTGGGGTTTTCTAGTAATTTCTCATGA 1050 0.541 MSNPNPTRIPHLQGDPNSTADPQVPLRNLSLVQTKMDSLQQFLSQSINSNTPLTKDQITVVSNQIVSAIHQIIVNGAALVNLSAATGASSVFPLKTPRPEPSAAAAKVKQVPDSKVKLAEEDEDDDAIELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPSLSEDGAAAARRRVATRFSCPFEGCSRNKLHRKFRPLKSVICVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHMRHCGESKWKCSCGTTFSRKDKLFGHIALFEGHMPALALDEEEKGKQVVMVEESEDPKSELGSSFVNDDGLPEEFFDDFGSIDNYCLQEVLGFSSNFS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02437 349 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Seca5g02437 349 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 108 306 IPR044300 GO:0010044|GO:0010447
Seca5g02437 349 FunFam Zinc finger 45-like 138 164 - -
Seca5g02437 349 Gene3D Classic Zinc Finger 141 164 - -
Seca5g02437 349 Gene3D Classic Zinc Finger 219 287 - -
Seca5g02437 349 SMART c2h2final6 141 163 IPR013087 -
Seca5g02437 349 SMART c2h2final6 232 254 IPR013087 -
Seca5g02437 349 SMART c2h2final6 194 227 IPR013087 -
Seca5g02437 349 SUPERFAMILY beta-beta-alpha zinc fingers 138 164 IPR036236 -
Seca5g02437 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Seca5g02437 349 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02437 Seca-Chr5 67876602 67877681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02437 121 292 C2H2 Transcription Factor Family AT1G34370 57.609 4.30e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g02437 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02437 - - gmx:100809135 452.595