Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02410 ATGTGCGGGATCCTTGCAGTGCTCGGTTGCGTCGATAACTCTCAGGCCAAGCGCGCTCGCATCATCGAGTTGTCTCGCAGGTTACGGCATAGAGGTCCTGATTGGAGTGGCATACACTGTCATGAGGATTGTTACCTTGCTCATCAACGGCTTGCTATTGTTGATCCTACTTCAGGGGATCAACCTCTGTACAACGAAGAAAAGACTGTTTTTGTCACTGTAAATGGGGAGATATACAATCATAAGCAATTGAGACAGAAACTGGATTCCCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAATATGGAGAAGAATTTGTTGATATGCTGGATGGGATGTTCTCCTTTGTCCTTATTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCCATTGGCATTACCCCTCTTTACTTGGGCTTTGGCCATGATGGATCAACATGGTTTGCATCTGAAATGAAAGCTCTGATTGACGATTGTGAGAGATTCATATCTTTTCCTCCGGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTACTCGGAGCATATTCCATCAACACCCTATGATCCAATAATTTTGCGTGAGGCCTTTGAGAGGGCTGTATTTAAGAGAATGATGACTGATGTACCTTTTGGAGTTCTTTTGTCTGGAGGACTGGACTCATCCCTTGTTGCTGCTGTGGCCAATCGATATTTGGCTAAATCTGAAGCTGCTCGTCAGTGGGGATCACAGCTACATACTTTCTGCATTGGTTTGAAGGGCTCTCCGGATTTGAGAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGTCACTACGAGCTTAATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGATGTAACGACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATTAAAGCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTATATTTCCATAAGGCACCTAACAAGGAAGAGTTTCAGGAAGAAACATGTAGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTTAGAGCCAATAAATCAACTTCAGCATGGGGTGTAGAGGCACGTGTACCATTCTTGGATAAAGATTTTATCAACATAGCCATGAGTATGGATCCAGAATGGAAAATGATAAGGCCTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGATAAGAATCCATATTTACCAAAGCACATATTGTATAGGCAGAAGGAACAGTTCAGTGATGGTGTCGGGTACAGCTGGATTGATGGCTTGAAGGATCATGCTAACAAACAAGTAGGCTGTAACTTGTGA 1434 0.4191 MCGILAVLGCVDNSQAKRARIIELSRRLRHRGPDWSGIHCHEDCYLAHQRLAIVDPTSGDQPLYNEEKTVFVTVNGEIYNHKQLRQKLDSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLIDTRDKSFIAARDAIGITPLYLGFGHDGSTWFASEMKALIDDCERFISFPPGHIYSSKQGGLRRWYNPPWYSEHIPSTPYDPIILREAFERAVFKRMMTDVPFGVLLSGGLDSSLVAAVANRYLAKSEAARQWGSQLHTFCIGLKGSPDLRAAKEVADYLGTRHYELNFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKALGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFQEETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKDFINIAMSMDPEWKMIRPDLGRIEKWVLRNAFDDDKNPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANKQVGCNL. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02410 477 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 477 - -
Seca5g02410 477 Gene3D HUPs 195 476 IPR014729 -
Seca5g02410 477 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Seca5g02410 477 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Seca5g02410 477 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Seca5g02410 477 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Seca5g02410 477 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Seca5g02410 477 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 201 470 - -
Seca5g02410 477 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Seca5g02410 477 PIRSF Asn_synthetase_glu-h 356 474 IPR006426 GO:0004066|GO:0006529
Seca5g02410 477 PIRSF Asn_synthetase_glu-h 1 360 IPR006426 GO:0004066|GO:0006529
Seca5g02410 477 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Seca5g02410 477 PANTHER ASPARAGINE SYNTHETASE 1 473 - -
Seca5g02410 477 CDD AsnB 2 192 IPR033738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02410 Seca-Chr5 67171274 67176940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02410 69 259 PRT Gene Family AT2G16570 31.776 5.13e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02410 K01953 - gmx:732660 922.539