Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02403 ATGCATGACCATCAAAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGCAGAATCTGAAAGAAGAGGAGGTTGTGTGATATCTCAAACTCCTGGAGCTCGAAAAACCTTTCTCCTTATTGCTTTTCTTTTTAGGGCGTATACTTCATTTTTATCACTAACAAAAGAGAATTCAAAGTATGAACACAAGAAGTATACGACTAAAGCTTTGAGAGAAAGCACTGGGATTTTGATACTCGATAAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAAGCACATTGTTTCAGAATAATTTTGGGGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTTCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAAATCCAAAGAAAGCAAAACATTTACTGGAGACACGTGCTAGAAAATTCTTCCTAGATGACATTGCTAACAAAATTAACTCATGTGATGATGAAGTGAGGATGCAGGGTCTGAACATGTTGAGAAAATTCACAAGTGGTTTAATAGATGTTTATGAGAGTGGGAATTTTTACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACAGATGTGCGAAATGAGCTTTTGCAGAAACTGCATAAGAAAATGGTCGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAATAGTAACAAGTGCGAATAAGTTTTACACTTCACAGGAACTAAACCAACTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGAGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTATTTGAGGAGTGCTTCAAATGGAAAAAAGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTCTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTACTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGTTAAAGCAGAATATTGCAAGGGTTTTTCGTCCTGGGCAGGAAAAAATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGAAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCTAACATGATTTTCAATGAGGATTTTGTAGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAGGCAATCCATATGATCATGAAGAATGAAAAAGATTCAACAAACTGA 1488 0.3777 MHDHQKKGFQFIWQNIAGSIQPTLMEAESERRGGCVISQTPGARKTFLLIAFLFRAYTSFLSLTKENSKYEHKKYTTKALRESTGILILDKGHNPRSTRSRLRKGLMKVETELRILLSSTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKNPKKAKHLLETRARKFFLDDIANKINSCDDEVRMQGLNMLRKFTSGLIDVYESGNFYKLPGLQIYTLLMNLTDVRNELLQKLHKKMVGSSVFPLEGELMVTLGSIHPWLIKIVTSANKFYTSQELNQLEKFKSDFRVGSKERFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLTSITTCAEGISLTAASRLIFLDSEWNPSKLKQNIARVFRPGQEKMVYVYQLLAKGSMEKDKYRRTTWKEWVSNMIFNEDFVENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKDSTN. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02403 495 Gene3D - 274 491 IPR027417 -
Seca5g02403 495 Gene3D - 63 181 IPR038718 -
Seca5g02403 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 466 IPR001650 -
Seca5g02403 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 477 IPR027417 -
Seca5g02403 495 CDD SF2_C_SNF 290 426 - -
Seca5g02403 495 SMART helicmild6 326 415 IPR001650 -
Seca5g02403 495 Pfam Helicase conserved C-terminal domain 299 414 IPR001650 -
Seca5g02403 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Seca5g02403 495 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 54 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02403 Seca-Chr5 67026423 67028168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02403 341 433 RAD5 or RAD16-like Gene Family AT5G05130 37.234 6.21e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02403 K10875 - gmx:100811703 603.208