Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02402 ATGAAGCTTTTAGTACAATTACTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTCTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGTTATTAGTCTTACTACAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGTTTTTCGTCCTGGGCAGGATTTTGCGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGGAGAGTATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCGTATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 408 0.402 MKLLVQLLEECFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITACAEVISLTTASRLIFLDSEWNPSKIKQAIARVFRPGQDFAENPSQWQAEKIGEYILREMVENDNPKAIRMIMKNEKASTN. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02402 135 CDD SF2_C_SNF 7 92 - -
Seca5g02402 135 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 133 IPR001650 -
Seca5g02402 135 Pfam Helicase conserved C-terminal domain 10 90 IPR001650 -
Seca5g02402 135 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 92 IPR044567 GO:0080188
Seca5g02402 135 SMART helicmild6 2 91 IPR001650 -
Seca5g02402 135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 94 IPR027417 -
Seca5g02402 135 Gene3D - 1 123 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02402 Seca-Chr5 67008046 67008561 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02402 4 92 RAD5 or RAD16-like Gene Family AT5G05130 40.000 2.66e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02402 K10875 - gmx:100785036 175.252