Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02398 ATGAAGCTTTTAGTACAATTATTTGAGGAGTGCTTGAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGATCTCTTTGAAAGAGGGAAAGGGATTGATAAGTTTGAGGATCCATTTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTACTCTTACTGCAGCTTCTCGGTTGATATTTTGGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTAAAAGGGCTTTTCGTCCTGGGCAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGTAGAGAATATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGTAATCCATATGATCATTAAGAATGAAAAAGCTTCAACAAATTGA 408 0.3824 MKLLVQLFEECLKWKKGGEILLLYGEQDLFERGKGIDKFEDPFGVSKVLLASITACAEGITLTAASRLIFWDSEWNPSKIKQAIKRAFRPGQDFVENPSQWQVENIEDDILREMVENDNPKVIHMIIKNEKASTN. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02398 135 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 93 IPR044567 GO:0080188
Seca5g02398 135 CDD SF2_C_SNF 7 92 - -
Seca5g02398 135 Gene3D - 1 130 IPR027417 -
Seca5g02398 135 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 134 IPR001650 -
Seca5g02398 135 Pfam Helicase conserved C-terminal domain 10 90 IPR001650 -
Seca5g02398 135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 94 IPR027417 -
Seca5g02398 135 SMART helicmild6 6 91 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02398 Seca-Chr5 66949071 66949586 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02398 4 92 RAD5 or RAD16-like Gene Family AT5G05130 41.111 5.32e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02398 K10875 - gmx:100781856 178.333