Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02397 ATGACCATCAGAAAAAAAGGTTTTCAATTTATTTGGAAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGCAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCTTTTTTTGTCATGGGGCATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATACGACTAAAGCTTTGAGAGAAAGCACTGGGATTTTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAAAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGGGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAAATCTAGAGAAAGCAAAACATTTACTTAAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGATTCAAGTGATGATGAAGTGAAGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGATAAGCTTCGTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTCGGGTAA 735 0.3646 MTIRKKGFQFIWKNIAGSIQPTLMEAESERRGGCVISHTPGAGKTFLVIAFFVMGHTSFLSLTRENSKYEHKKYTTKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELKILLSGTLFQNNFGEYFNTLCLARPKFVQVLKELDTKQKKGNDKNLEKAKHLLKTRARKFFLDDIANKIDSSDDEVKMQGLNMLRKITSGFIDVYGSGNSDKLRGLQIYTLLMNLTDVQNELLQKLQKKMVG. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02397 244 Gene3D - 3 71 IPR038718 -
Seca5g02397 244 Gene3D - 83 181 IPR038718 -
Seca5g02397 244 Pfam SNF2-related domain 59 171 IPR000330 GO:0005524|GO:0140658
Seca5g02397 244 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 5 52 IPR044567 GO:0080188
Seca5g02397 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 152 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02397 Seca-Chr5 66947847 66948839 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g02397 SNF2_N 8.9e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02397 K10875 - tcc:18585788 266.159