Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02383 ATGACACAGCAGAATGTGGTAGTGTCTGATACCAAATCTGGAGTGGCTGTAACAATTTTCCCAACAACATCACAAAAACCACCAGCCTCACCAGGAGGAGCCTACATTTCCATTCCAAGAAGGAGGGTCTTGAAGAACCTTGAAATCAATGGTGGACAAAGAATCAATGCATGGCTTGACTCCATGAGAGCTTCTTCTCCAACTCATCTCAAATCCACACCTTCTTTGGCTGAAGAACAAAACTCTTGGATTCTTCACCACCCGTCAGCATTAGACATGTTTGACCAAATCATGGATGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGTACACTGTCCCCTATAGTTGATGATCCTGACCGTGCTTTCATGTCTGATTCGATGAGGAAAACAGTTAGGAAACTTGCAAGGTGTTTTCCTACTGCTATAGTGACTGGTAGATGCAAAGACAAGGTATACAATTTTGTTCGTCTGGCAGAGCTTTATTATGCTGGAAGCCATGGAATGGATATTAAAGGCCCAACAAGAACCTCCAAATACAACAAAGATAGTAAAGCTGAAGCAGTTCTTTTTCAACCTGCCAGTGAATTTCTCCCCATGATAGATGAGGTGTACCAACAATTGGTTGATAAGACAAAATCAACTCCTGGAGCTAAGGTTGAGAACAACAAGTTCTGTGTCTCTGTTCATTTTCGTTGTGTTGAGGAAAAGAAATGGAGTGAACTAGCACAACAAGTGAAATCAGTGTTAAAGGACTACCCCAAGCTTCGTCTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTTGGATTGGCCAACTGTAGTGATGTCTTTCCTGTTTATATTGGTGATGATCGATCTGACGAAGATGCGTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGTATTCTTGTCTCGAAATATCCAAAAGACACAAGTGCATCTTACTCTTTACAAGAACCCAATGAGGCAAGTATAATTTTATTTTTGCACCATTAG 1065 0.4094 MTQQNVVVSDTKSGVAVTIFPTTSQKPPASPGGAYISIPRRRVLKNLEINGGQRINAWLDSMRASSPTHLKSTPSLAEEQNSWILHHPSALDMFDQIMDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRTSKYNKDSKAEAVLFQPASEFLPMIDEVYQQLVDKTKSTPGAKVENNKFCVSVHFRCVEEKKWSELAQQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKYPKDTSASYSLQEPNEASIILFLHH. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02383 354 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Seca5g02383 354 Gene3D - 108 340 IPR023214 -
Seca5g02383 354 FunFam Trehalose 6-phosphate phosphatase 198 274 - -
Seca5g02383 354 CDD HAD_TPP 107 343 - -
Seca5g02383 354 FunFam Trehalose 6-phosphate phosphatase 106 193 - -
Seca5g02383 354 Gene3D - 188 274 - -
Seca5g02383 354 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 20 347 IPR044651 GO:0004805|GO:0005992
Seca5g02383 354 SUPERFAMILY HAD-like 107 352 IPR036412 -
Seca5g02383 354 FunFam Trehalose 6-phosphate phosphatase 204 354 - -
Seca5g02383 354 NCBIfam trehalose-phosphatase 104 345 IPR003337 GO:0003824|GO:0005992
Seca5g02383 354 NCBIfam HAD-IIB family hydrolase 108 319 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02383 Seca-Chr5 66505720 66508991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02383 108 316 Trehalose Biosynthesis Gene Families AT1G60140 28.182 5.12e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02383 K01087 - gmx:100815357 648.277