Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02380 ATGGGTGGTGCAGGAGTAATAGTGAGCTACCACGACGTGCCAGTGGACACCTGTCGTGGAAGACCTTATGGGGGGTGTGACAAACCCATTTCCTTAACCCAGAAATTACCCCCTAACTCCTACCAACCGTTGCGAGGGCACTGCCATGGGCGCCATCGTTCTCGATCTCCGACCCGGTACAGTTGGTCAGTTAGTGGTTCTCTAATCGCGATTGTCCTCGGCGATGTTTTGGTGCTCGCCGTGGTTTCGCTGCTTCTCTACTGCTACTTCTGGCGAAACTACAATGCTGAGTTCAGGGAAGGGAAAGCAGGGTTGTCGAATTCAAAGCGTGTGGAGGGTGAAAAGATGGTTTATACTTCGAGTGTTTCCGCTGGGCAACAGGGGTTGGAGAAGGGTAGAATGGTGTTCTTTGAAGGGGTGAAAAGGTTTGAGCTAGAGGACTTGTTGCGTGCCTCTGCGGAAATGCTGGGGAAGGGTGGGTTTGGTACAGCTTACAAGGCTGTTCTTGATGATGGAACAGTTGTTGCTGTGAAGAGGCTCAGGGAGGTTCAAATTGGAGGGAAGAGAGAGTTTGAGCAGCGAATGGAAATGTTGGGAAGGTTAAGAAACCCCAACATTGTTAGCTTAAGAGCTTACTATTTTGCAAGGGATGAGAAATTGCTTGTCTGTGATTACATGCCTAATGGTAGCTTGTTCTGGCTCCTTCACGGTAAGTTTATGGATCCACTGACAAAAGGGAAGTATCCAAAAAGAATGGTGTCTTTAGTGGGAAACCGATTACCAAATTTCACTGAAGAGCAATCTAAGCTACTTATTGGCTCATTTGATTTTCTTGGACTAAATTACTACACCACTAATTATGCTGCTCATATAACCCATCCAAGTAATGATGAAAGCAAATCTATCTATTACAAGGATTCGCATGTCAACTTAACAATTTCTTTAACCGTCGCAAATGTTGCTCTCGACGCACGAAATTGCGGCGGTAAACTTGCAACTGTTTGA 1005 0.4627 MGGAGVIVSYHDVPVDTCRGRPYGGCDKPISLTQKLPPNSYQPLRGHCHGRHRSRSPTRYSWSVSGSLIAIVLGDVLVLAVVSLLLYCYFWRNYNAEFREGKAGLSNSKRVEGEKMVYTSSVSAGQQGLEKGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGTVVAVKRLREVQIGGKREFEQRMEMLGRLRNPNIVSLRAYYFARDEKLLVCDYMPNGSLFWLLHGKFMDPLTKGKYPKRMVSLVGNRLPNFTEEQSKLLIGSFDFLGLNYYTTNYAAHITHPSNDESKSIYYKDSHVNLTISLTVANVALDARNCGGKLATV. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02380 334 ProSiteProfiles Protein kinase domain profile. 150 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02380 334 Pfam Glycosyl hydrolase family 1 236 299 IPR001360 GO:0004553|GO:0005975
Seca5g02380 334 SUPERFAMILY Protein kinase-like (PK-like) 154 245 IPR011009 -
Seca5g02380 334 SUPERFAMILY (Trans)glycosidases 230 299 IPR017853 -
Seca5g02380 334 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Seca5g02380 334 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 47 237 IPR046959 -
Seca5g02380 334 FunFam pollen receptor-like kinase 1 120 225 - -
Seca5g02380 334 Pfam Protein kinase domain 153 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02380 334 Gene3D Glycosidases 228 325 - -
Seca5g02380 334 Gene3D Phosphorylase Kinase; domain 1 118 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02380 Seca-Chr5 66271816 66274739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02380 20 237 Receptor kinase-like Gene Family AT1G68400 54.825 5.45e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g02380 Glyco_hydro_1 3.2e-11 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02380 - - tcc:18609189 253.447