Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02378 ATGATACAAGATTTCCTAGACCCATGTAGTGAAGAGCTGATGAAAGCACTTGAACCTTTTATGAAAAGTGATTCATCTTGCACTTCCTCCATAACCTCCTTTTCTTTCTCTTCCCCTTCTCCTTCTTCCACTTGTTCCTCCCCTGCCACCTCTTACCCTTCACTTTCTTCTTCTTTTCCAAACTTCCCCTTAAAACCATCCAACACCCACATGTTTTCCCATGACCAAAAGGGTTCCATCAAGTTGAACCAACTCACCCCATCTCAAATTCTTCAGATTCAAGCTCAAATCCAGATTCGACAACAACATCAACATCATGTCTCTGACATTCTCCAACACCAGAGCCCAAAACATGTTCCCATGAAGAAATCAACAAAGCTCTACCGTGGTGTGAGACAGAGACATTGGGGCAAATGGGTCGCTGAGATCAGACTCCCCAAGAATCGTACACGTCTCTGGCTTGGTACATTTGACACAGCAGAGGAAGCAGCTTTAGCATATGACAACGCAGCGTTTAAGCTAAGGGGTGAACATGCTCGCCTTAATTTCCCTCATCTTCGCCACCATGGAGCTCATGTCTATGGTGAATTTGGGGACTACAAGGCTCTACCTTCCACGGTGGATGCAAAGCTCCAAGCTATTTGTCAAAGCTTGCAGCAGGGGAAAACAGAGAAGCTCTGTTCTGTTGTTGATACAAAGCCTCCAAAGGCAAAATTGGAGTTTGATGTGACACAATTCAACAATGAAACAGAGGACTATAAGGTGCAGAAGCAAAAATCATCGTCCTTTTCGTATTCACCTGAATCTGATATTACTTTCTTGGATTTCTCGGGTTCTAATGAAACAGAGCATATTGGATTGGACTTGGAGAAGTATCCTTCAGTGGAGATTGATTGGGAAGCCATATGA 909 0.4378 MIQDFLDPCSEELMKALEPFMKSDSSCTSSITSFSFSSPSPSSTCSSPATSYPSLSSSFPNFPLKPSNTHMFSHDQKGSIKLNQLTPSQILQIQAQIQIRQQHQHHVSDILQHQSPKHVPMKKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEHARLNFPHLRHHGAHVYGEFGDYKALPSTVDAKLQAICQSLQQGKTEKLCSVVDTKPPKAKLEFDVTQFNNETEDYKVQKQKSSSFSYSPESDITFLDFSGSNETEHIGLDLEKYPSVEIDWEAI. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02378 302 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Seca5g02378 302 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Seca5g02378 302 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Seca5g02378 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 302 - -
Seca5g02378 302 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Seca5g02378 302 Gene3D AP2/ERF domain 127 185 IPR036955 GO:0003700|GO:0006355
Seca5g02378 302 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Seca5g02378 302 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Seca5g02378 302 Pfam AP2 domain 128 177 IPR001471 GO:0003700|GO:0006355
Seca5g02378 302 CDD AP2 126 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02378 Seca-Chr5 66233242 66234219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02378 1 302 AP2-EREBP Transcription Factor Family AT4G39780 48.701 6.73e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g02378 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02378 K09286 - gmx:100818839 286.574