Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02361 ATGGACAATAATGATGATGAATATGTTGTTCATTTGGACAATGATAACGATCCGAGTTTTCGTTGTAGTGTCAGCGCTGATGATAGTACAAGTGAAGAGGATTATGATTTGGGTGATAATAGTGAGCCGAATAATGTAGATGCAACGGAAGAAGAATATAAAAAGATAATAGACTTGACTGCTGAAGATATATCAAGTATGGAGTTTTGTAGTGAAACTGAAGTTTGTGAGTTTTATACTTTGTATGCAAAATTACATGGATTTGTGATGAGGAAAGATGATGTTGCACGAGATTATCATGGAAATTTGATTATGCGTCAGTTGGTGTGCAATAGGGAGGGAAGGAGAGATAAAAAACACTTCATGAGGGTAGATAGAAAAAGGGCTCACAGACCAATCACACGAACTAAATGTGAAGCTAGGTTGCGGGTACACTTTGATTATAGATCCTAA 453 0.3642 MDNNDDEYVVHLDNDNDPSFRCSVSADDSTSEEDYDLGDNSEPNNVDATEEEYKKIIDLTAEDISSMEFCSETEVCEFYTLYAKLHGFVMRKDDVARDYHGNLIMRQLVCNREGRRDKKHFMRVDRKRAHRPITRTKCEARLRVHFDYRS. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02361 150 Pfam FAR1 DNA-binding domain 77 146 IPR004330 -
Seca5g02361 150 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 25 145 - -
Seca5g02361 150 MobiDBLite consensus disorder prediction 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02361 Seca-Chr5 65848205 65848657 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02361 FAR1 1.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02361 - - ccaj:109792835 144.436