Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02359 ATGGGATTGAGGGAACGTACCAGCAGCAGCATGGAAGATCCAGATGGGACATTAGCAAGTGTTGCTCAATGCATTGAGCAGCTACGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAACAGTTATTGGACCTTATTGATATGCGTGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGCTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTCTCCTTGGTCTACTCAAGTCTAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATATTTTCAACTGAAGGAGTTGTTCCGGTTCTCTGGGAGCAGCTGCAAAAGGGCCTGAAGAATGGAAGTGTAGTCGATAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTCGACATATTAGTGAAGTTGCTGACAACAGGGCAGTCTAGCACCTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTATTGACAGCAGAGGCAACAAAACAACTTCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAATGCAAAGATGCAAGGAAAGAGATAGCCAATTCTAATGGCATTCCTGCTCTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGTTCCTCGCCTACCCAAATCGCCGACACATTGGGGGCTTTAGCTTCCGCTCTTATGATATATGATGACAAGGCAGAATCTACTAGAGCATCAGATCCTTTGGTAGTTGAGCAGACACTACTCAAGCAATTTAAACCTCACTTGCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCCCTAGCTAGTTTGTATGGCAATCCTATACTGTCACTTAAACTTGCAAATTCTGATGCAAAGCGGTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTATGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTAGGGCTTTCATCAGAACAACAGCAAGAATGTGCTGTTGCCCTACTTTGTCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTATTATGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGACACAGCGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCAAAGGTTTACGTTTTAGATGCTTTGAGAAGTATGCTTTCTGTTGTTTCCCTTAGTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTATTGAGCTCAACCAAGGAAGAAACTCAAGCAAAGTCTGCGTCAGCTCTGGCAGGAATTTTTGAAATGAGGAAAGATGTGCGTGAAAGCAACATTGCTGTTAAAACTCTTTGGTCATCCATGAAGCTACTTAATGTTGAATCTGAAATTATCTTAATGGAGTCCTCACGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGAGGTAGCTTCTATTGCTAGAGATGCATTATCCTCCCTAGTTGCACTAGCTAGCTCTCCAGTTTTGGAAGTGGCGGAGATGGCAACATGTGCTGTGGCTAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTACGGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACGGGAAGGCACAATTTCTGGAAAAACACATGCAGCAGCAGCGATTGCTCGCCTCTTACATTCTAGGAAAGTTGATTATGCTGTAAATGATTGTGTGAATCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTTCTATTAATGGACCTGTTGCCACATCAGAGGCCCTAGAAGCACTTGCCATTTTGTCCAGGTCAGCAGAGACCAGTGCACACAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTTCTGTCTATTGCTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATACTATCTCGATTATGTAAGGATCAGCCTTTTGTGTTAGGAGACACTGTTGCTTCTTCCTCTGGATGTATACCTTCTATAGCTAAGAGGATAATTAATTCCGCATCTACAAATGTAAAGGTCAAAATTGGGGGAGCTGCAGTTCTTATTTGTGCTGCTAAAGTAAATCATCAGAGGCTGGTGGAGGATCTCAATTTATCAAACTTATGTGCTAATCTTGTTCAGTCTCTTGTTGATATGCTTATTTCTTCACAAGCTACTTTGGGTAATCAGGGTGATGACAACAAGGAAGTCATTAGCATTTGCAGGCATACAGAAGAAGAAGCCAATGATGGTAAATCCAACACTGCCACTGCTATTATATCTGGTGCCAACTTAGCTATATGGTTACTGTGTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCCATAATGGAGGCTGGAGCAATTGAGGTTCTAACTGACAGGATCGCAAATTGTTTCACACAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTATTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACTATGAAATCCATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAAACAGCAAACAGGTATTTTGCTGCACAATCAATATCTAGCCTAGTTTGTAATGGAAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGGGCGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAAATGAGTTTTCTTTGGTGCCATATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCTCTTGGGATTTTGACTCAGCTTGCCAGAGATTGTCCATCGAATAAACTTGTAATGGCAGAATCTGGGGTTCTAGAGGCACTCACTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACAGATCTGTTGGGAATTCTGTTTAGCAGTGCTGAGATACGGAGGCATGAGTCAGCATTTGGTGCTGTTGCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCAAAAGCCCTGGAAAGTCTATTCTCTGCTGACCACATTAGCAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTCAATACCGGTTTAGAGAGAGAGCAGCATGCTGCAATTGGTGCATTAGTTAGGTTACTTAGTGAAAACCCTTCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGAATTCGGTCCACAATGGCTGCTGCGCGCTGTGTTGAACCCCTGGTCTCTCTCCTTGTGTCTGAGTTTAGCCCTGCTCAGCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAATTGGCCGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTAATGTATGGTAGGAACTATGTACTTCATGAGGCCATTTCCAGAGCTCTTGTCAAGTTAGGAAAGGACAGGCCTACTTGTAAAATGGAGATGGTGAAAGCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGAATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTTTTTATGCTGACAAGACAAGAATTTGGGCCTGATGGACAACACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAATGTCGTGCTGATTACACATTGACTTCTCACCAAGTTATTGAGCCACTCATCCCTTTGCTTGATTCTCCAATATCGGCAGTGCAACAATTGGTTGCTGAACTTCTCTCACATCTGCTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGTCCTCTTATACGAGTTCTTGGTTCTGGCATACATATATTACAACAGAGAGCTGTAAAGGCCCTAGTCAGTATTGCTACTGTATGGCCAAATGAAATTGCAAGAGAGGGTGGTGTTATTGAAATTTCAAAAGTGATATTGCAAGCTGACCCTTCAATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGTTGCTTCGGTCTGGCTCAGAGAGCACGGTTATTGGTGCATTAAATGCTCTTCTTGTGTTAGAATGTGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGCGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGATACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCCCAAACCCAAGTACAACAAGCAAGGTTATTAGCAACTTTGGCCCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACACCTGATGCAGTTTCAGCTTGCCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAATGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGGCTGAGAGCAACTGAACCAGCAACACTTACCATTCCACATTTGGTTACGTCCTTGAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATACACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCCCAGTCCATAACAGCTGCAGATGCTATTCCTTTGTTACAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAACGTGGTAATAATATGAAGCAATCAGTTGGAAACCCGAGTGTTTATTGTAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACGAAGGTGGTCTCGACTGGCCCAAATCCAGAATGGGATGAGAGTTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAACTTCACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAGATTGATCGGGTGGTGATGCTGGGAGCAGTATCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6225 0.4307 MGLRERTSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKNGSVVDSLLTGALKNLSSSTERFWNATIQAGGVDILVKLLTTGQSSTLANVCFLLACMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGALASALMIYDDKAESTRASDPLVVEQTLLKQFKPHLPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFEMRKDVRESNIAVKTLWSSMKLLNVESEIILMESSRCLAAIFLSIKENREVASIARDALSSLVALASSPVLEVAEMATCAVANLILDSEIAEKAVTEEVILPATRVLREGTISGKTHAAAAIARLLHSRKVDYAVNDCVNRAGTVLALVSFLDSSINGPVATSEALEALAILSRSAETSAHSKPAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPFVLGDTVASSSGCIPSIAKRIINSASTNVKVKIGGAAVLICAAKVNHQRLVEDLNLSNLCANLVQSLVDMLISSQATLGNQGDDNKEVISICRHTEEEANDGKSNTATAIISGANLAIWLLCVLACHDEKSKIAIMEAGAIEVLTDRIANCFTQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEETANRYFAAQSISSLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSNEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLARDCPSNKLVMAESGVLEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLVAVLRLGGRAARYSAAKALESLFSADHISNAETARQAVQPLVEILNTGLEREQHAAIGALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLMYGRNYVLHEAISRALVKLGKDRPTCKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQVIEPLIPLLDSPISAVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIATVWPNEIAREGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLECDDGTSAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQVQQARLLATLALGDLFQNEGLARTPDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLTIPHLVTSLKTGSEATQEAALDTLFLLRQAWSACPAEVSRAQSITAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK. 2075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02359 2074 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1340 1574 - -
Seca5g02359 2074 SUPERFAMILY ARM repeat 985 1118 IPR016024 -
Seca5g02359 2074 SMART C2_3c 1954 2050 IPR000008 -
Seca5g02359 2074 SUPERFAMILY ARM repeat 1325 1612 IPR016024 -
Seca5g02359 2074 SUPERFAMILY ARM repeat 1154 1357 IPR016024 -
Seca5g02359 2074 Pfam Armadillo/beta-catenin-like repeat 62 92 IPR000225 GO:0005515
Seca5g02359 2074 Pfam Armadillo/beta-catenin-like repeat 483 523 IPR000225 GO:0005515
Seca5g02359 2074 Gene3D - 1490 1952 IPR011989 -
Seca5g02359 2074 Coils Coil 255 275 - -
Seca5g02359 2074 Gene3D C2 domain 1953 2074 IPR035892 -
Seca5g02359 2074 Gene3D - 572 780 IPR011989 -
Seca5g02359 2074 Gene3D - 781 1128 IPR011989 -
Seca5g02359 2074 ProSiteProfiles C2 domain profile. 1934 2051 IPR000008 -
Seca5g02359 2074 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1156 1200 IPR000225 GO:0005515
Seca5g02359 2074 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1836 2074 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Seca5g02359 2074 Gene3D - 9 365 IPR011989 -
Seca5g02359 2074 Pfam C2 domain 1953 2049 IPR000008 -
Seca5g02359 2074 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1953 2074 - -
Seca5g02359 2074 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1952 2071 IPR035892 -
Seca5g02359 2074 Gene3D - 1362 1480 IPR011989 -
Seca5g02359 2074 SMART arm_5 1441 1481 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1189 1230 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 94 134 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 691 729 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1358 1398 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 775 817 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 483 523 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1144 1187 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 52 93 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 525 565 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1690 1729 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 269 318 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1399 1439 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1526 1567 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 1273 1312 IPR000225 GO:0005515
Seca5g02359 2074 SMART arm_5 226 267 IPR000225 GO:0005515
Seca5g02359 2074 SUPERFAMILY ARM repeat 21 731 IPR016024 -
Seca5g02359 2074 SUPERFAMILY ARM repeat 617 946 IPR016024 -
Seca5g02359 2074 CDD C2 1955 2045 - -
Seca5g02359 2074 Gene3D - 1138 1359 IPR011989 -
Seca5g02359 2074 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Seca5g02359 2074 Gene3D - 375 571 IPR011989 -
Seca5g02359 2074 SUPERFAMILY ARM repeat 1580 1951 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02359 Seca-Chr5 65787614 65798744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02359 446 578 U-box Gene Family AT2G23140 40.741 3.43e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02359 - - gmx:100816765 3649.37