Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02343 ATGACAGCTCTCTCTAAGCTCTTCCACAAGCTTTGGGGCAAAATGATGATCCTATTGGCATTCTTGCTAATAGAACTCATCATCCTATTTTGGAAACTAACCTCAGATACACGCCCAATCACCACACGGCAATACCTCAAATTCATTGAACAGAAGAACCCCACGGTTCGCTGCACCAAAAGATTGAAGGCAGAGCAAGGGGAGTGTACGGTGTGCTTATGTGAATTCGAGGAAGGAGATAAGGTGAGGAAGTTGAAATGCAAACACATGTTTCATAGGGATTGTTTGGATAAGTGGTTGCAAGAATATTGGGCTACATGCCCACTTTGTAGGATTCAAGTGTTGCCTGATGATGTTGTGTCTAAACATCGTCAGCTTCGAAATCAGGAAGGTTCTTCTAATGGGAATGATGAGCATCTTCCCTATTTGTTATTCGCATTACGCGGTGGTAATTCTAGTGCTCGCAGATTTCTCTGA 477 0.4319 MTALSKLFHKLWGKMMILLAFLLIELIILFWKLTSDTRPITTRQYLKFIEQKNPTVRCTKRLKAEQGECTVCLCEFEEGDKVRKLKCKHMFHRDCLDKWLQEYWATCPLCRIQVLPDDVVSKHRQLRNQEGSSNGNDEHLPYLLFALRGGNSSARRFL. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02343 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 116 IPR013083 -
Seca5g02343 158 SUPERFAMILY RING/U-box 50 117 - -
Seca5g02343 158 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Seca5g02343 158 SMART ring_2 69 110 IPR001841 -
Seca5g02343 158 Pfam Ring finger domain 68 111 IPR001841 -
Seca5g02343 158 PANTHER - 1 152 - -
Seca5g02343 158 FunFam Putative RING zinc finger domain superfamily protein 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02343 Seca-Chr5 65446529 65447005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02343 67 122 C3H Transcription Factor Family AT1G15100 51.786 1.12e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02343 K16282 - gmx:102668078 199.519