Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02342 ATGGCATCTCTCTCTAGTCTCTTCAAATACCTTTGTTGCAAGATGATAATCCTATTAGCAGTCCTGCTAATAGAACTCATCATCCTCTTTCGGAAACTAACTTCAGATACACGTCCAATCACCACACAGCAATACCTCAAATTCATTGAACAGAAGAACCCCACCATTTGCTACACCAAGGTACTGAAACCTGAAGTGCAAGGGGAGTGTACGGTGTGCTTATCTGAATTCGAGGAAGGAGATAAGGTGAGGAAGTTGAAATGCAAACACACGTTTCACAGAGATTGTTTAGACAAGTGGTTGCAAGAATATTGGGCTACATGCCCACTTTGTAGGATACAACTGTTGCCATATGATATTGTGTCCAAGCATCGTCTTCGGAATGTGGAAGGTTTTAATGGGAATGGTGAGCACTTTCCCTTTCTGTTATCCGCATTAAGTGGTGGTAATAGAATAAGTAACTTCATCTTTTAG 474 0.4114 MASLSSLFKYLCCKMIILLAVLLIELIILFRKLTSDTRPITTQQYLKFIEQKNPTICYTKVLKPEVQGECTVCLSEFEEGDKVRKLKCKHTFHRDCLDKWLQEYWATCPLCRIQLLPYDIVSKHRLRNVEGFNGNGEHFPFLLSALSGGNRISNFIF. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02342 157 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Seca5g02342 157 PANTHER - 1 150 - -
Seca5g02342 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 117 IPR013083 -
Seca5g02342 157 SUPERFAMILY RING/U-box 69 118 - -
Seca5g02342 157 SMART ring_2 70 111 IPR001841 -
Seca5g02342 157 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02342 Seca-Chr5 65312079 65312552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02342 68 123 C3H Transcription Factor Family AT1G15100 53.571 1.15e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02342 K16282 - gmx:102661897 185.652