Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02336 ATGGCTGATCACTCAGACTCTTCTCCTCTTGTCCCTCCCCTCCCACTCTCTGACCCTTCCGAGATCGACCTTGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTTGAAACTGATGGTAGAGATTTCATAGCTCCTTGTAAGTGCAAAGGTACATCAAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCTTGAAGTTTCGTTTTTTTGTCACCAGAGACATTTTGTTTATTTTCCTGGCTGTCCAGCTTGTCATTGCCTCGCTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTTTTGTTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGTACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCGTTATTATTCATAATGGCTTTGATTGTTCTTGGACTTTTTACTGTAATTGGGATATTTTACAGCGTATTGGTGGCTACTATGGTAGGTCAACGGATATGGCAACGTCACTATCACATACTTGCAAAAAGGATGTTAACAAAGGTATGGGTGGTTTACTTTCTCATTTTTTGTGCATTCGGTGCATTACTATTAAGTTTCAATTCCTGCTGTAATTCAGCTTACAAGTCAGGCTAA 957 0.4284 MADHSDSSPLVPPLPLSDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVWVVYFLIFCAFGALLLSFNSCCNSAYKSG. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02336 318 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Seca5g02336 318 CDD RING_CH-C4HC3_MARCH 34 82 - -
Seca5g02336 318 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 292 - -
Seca5g02336 318 SMART ringv_2 33 82 IPR011016 GO:0008270
Seca5g02336 318 SUPERFAMILY RING/U-box 29 86 - -
Seca5g02336 318 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Seca5g02336 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02336 Seca-Chr5 65198910 65204076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02336 1 292 C3H Transcription Factor Family AT2G22120 84.983 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02336 - - gmx:100791777 576.63