Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02333 ATGAATTCAACATCCACACAGTTTGTTTCCTCAAGAAGGATGAGTGTGTACGATCCTATCCACCAGATTAGTAGTATGTGGGGGGAAGGGTTTAAAACCAATGGTAATTTAGGTGCACAAATTCCCTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAACACCTAACAAGTATGACCAAGAAGCTCATAAACCTATTGATAAGATACAAAGACGTCTTGCACAGAATCGAGAGGCTGCTCGTAAGAGCCGTCTGCGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAACAGGGAATGTATATAGGTGGTGGGTTGGATTCTAATAATCTCAGTTTTGCTGGACCTGTAAATTCAGGAATTACAGCCTTTGAGATGGAGTATGGACTTTGGGTGGACGAGCAAAACAGGCAAATCTCAGAAGTGAGAAATGCTTTAAATGCTCATATTGGTGACATAGAGCTTAGGATTCTGGTAGATGGTATGATGAACCACTATATTAAAATCTTTCGCCTGAAATCTGCAGCTGCAAAAGCAGATGTTTTCTATGTCATGTCTGGAATGTGGAAAACAACAGCAGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGGCCCTCTGAGCTTCTAAAGGTTCTTGGTCCAATGATTGAACCCTTGACAGAGCAACAACGGTTGGATATTGATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAGGAATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAATTCGTTGAAGGAACTTATATTCCACAGATGGCATCTGCAATGGAGAAGTTGGAAGCTCTGGTAAGCTTTGTGAACCAGGCTGATCATCTTCGGCAGGAAACATTGCAGCAAATGTCTAGAATACTTACAATCCGTCAGTCAGCACGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTAAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1092 0.4322 MNSTSTQFVSSRRMSVYDPIHQISSMWGEGFKTNGNLGAQIPLIDEADMKFDSQSEDASHGILGTPNKYDQEAHKPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNNLSFAGPVNSGITAFEMEYGLWVDEQNRQISEVRNALNAHIGDIELRILVDGMMNHYIKIFRLKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFVEGTYIPQMASAMEKLEALVSFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02333 363 CDD bZIP_HBP1b-like 79 131 - -
Seca5g02333 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Seca5g02333 363 SMART brlzneu 75 146 IPR004827 GO:0003700|GO:0006355
Seca5g02333 363 FunFam BZIP family transcription factor 78 127 - -
Seca5g02333 363 Coils Coil 98 125 - -
Seca5g02333 363 Gene3D - 78 127 - -
Seca5g02333 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Seca5g02333 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Seca5g02333 363 Pfam bZIP transcription factor 79 113 IPR004827 GO:0003700|GO:0006355
Seca5g02333 363 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Seca5g02333 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Seca5g02333 363 SUPERFAMILY Leucine zipper domain 79 121 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02333 Seca-Chr5 65075273 65080609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02333 1 363 Calmodulin-binding Proteins AT5G10030 70.411 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca5g02333 DOG1 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02333 K14431 - gmx:100793353 645.966