Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02315 ATGGAGAAAAGGGGTAATGTATTGATGCAGAAGTATGAGTTTGGCAGACTATTAGGCCAAGGGAACTTTGCAAAGGTTTACCATGCAAGGGACCTAAGAACTGGAGACAGTGTTGCCATTAAGGTTATTGACAAGGAGAAAATCCTAAAAATTGGGCTGGTGGATCAAACCAAGAGAGAGATATCTATTATGAGACTGGTTAAACACCCAAATGTTTTGCAGCTTTATGAGGTATTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCTAAAGGGGGTGAACTTTTCAACAAGGTAGCTAAAGGTAGACTCCATGAGGACATGGCAAGGAAGTACTTTCAACAATTGATCAGTGCTGTTGATTTTTGCCACAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAGAATTTGCTTTTGGATGAGAATGGAGTTCTCAAAGTAGCAGATTTTGGATTGAGTGCACTTGTTGAATCTCATCGCCAAGGCAACATGCTGCATACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTAGAAAGGGTTATGATGGAGCAAAAGCTGATGTTTGGTCTTGTGGGGTGATCTTATATGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTGAACCTTATGGCACTGTATAGGAAAATAGGCAAAGCAGAATACAAATGTCCAAACTGGTTTTCATTTGAAGTTCGCAGACTATTAGCAAGAATCCTTGACCCCAATCCTGATTCTAGGATTTCCACAGCTAAAGTTTTGGAAAATTCATGGTTCAGAAAAGGACTCAACTCCAAATCTGTTCAAGTCAAAAGAGAGGTTGCAAATGTGGCTTCAGTTGATTCTGATAAAGTATTTGATTTGTGTGAGAATGCACATCAAGCATTGGTTAAACCTACAAATTTAAATGCTTTTGATATAATTTCTCTGTCTGCTGGGCTTGACTTGTCTGGCCTTTTTGCAAGCAATGAGGAACAAGAAGATATCAAATTTACATCCATGAGCTCTGCCTCATTCATCATATCTACAATGGAGGATATTGCTCACACTCTGAAGATGAAGATAACTAAGAAGGATGGAGGGTTGTTGAAACTGGAGAGATCCAGGGAAGGTAGAAAAGGGCCACTTTCAATTGATGCTGAAATATTTGAGTTCACCCCATCTTTCCATTTGGTTGAGATGAAGAAAACCTGTGGTGATGCATTAGAATACCAAAAGATACTGAAAGAGGATATAAGACCAGCTCTCAAAGATATTGTATGGAATTGGCAAGGTGAACAGCAACAGCAGTAG 1314 0.3965 MEKRGNVLMQKYEFGRLLGQGNFAKVYHARDLRTGDSVAIKVIDKEKILKIGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKVAKGRLHEDMARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLSALVESHRQGNMLHTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILYVLLAGHLPFYDLNLMALYRKIGKAEYKCPNWFSFEVRRLLARILDPNPDSRISTAKVLENSWFRKGLNSKSVQVKREVANVASVDSDKVFDLCENAHQALVKPTNLNAFDIISLSAGLDLSGLFASNEEQEDIKFTSMSSASFIISTMEDIAHTLKMKITKKDGGLLKLERSREGRKGPLSIDAEIFEFTPSFHLVEMKKTCGDALEYQKILKEDIRPALKDIVWNWQGEQQQQ. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02315 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca5g02315 437 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02315 437 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Seca5g02315 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 424 - -
Seca5g02315 437 Gene3D Transferase(Phosphotransferase) domain 1 92 298 - -
Seca5g02315 437 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02315 437 FunFam Non-specific serine/threonine protein kinase 304 428 - -
Seca5g02315 437 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Seca5g02315 437 Gene3D Kinase associated domain 1, KA1 304 429 - -
Seca5g02315 437 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Seca5g02315 437 SUPERFAMILY Protein kinase-like (PK-like) 8 289 IPR011009 -
Seca5g02315 437 Pfam NAF domain 306 364 IPR004041 GO:0007165
Seca5g02315 437 CDD CIPK_C 310 424 - -
Seca5g02315 437 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Seca5g02315 437 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02315 437 FunFam Non-specific serine/threonine protein kinase 2 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02315 Seca-Chr5 64728870 64730204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02315 1 436 CBL-interacting serine-threonine protein kinases AT5G58380 60.793 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g02315 Pkinase 3.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02315 K07198 - gmx:100816254 748.429