Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02310 ATGGAAGATCCAATCGGTGGTAGAAGCGATTTGTATGATGAGAACAATGCATCAGAGGGAGGAGAAGGAATGTCAAGTAGCAATGGTAATAATGTTGATAATGAGAACGATGGTGTTGATGGTGAAGGTGAACACATGTATGAACATTCTGATGCAGAAGTTGATGTTGATGAATACAGAATAGACAATAAGTCAGATATAAAGCGGGTACAGTTCTTGAGCTTAACTATTGAAGAGTTTAAATTGTACCACTTCTTCATTCGGCTTGTGGCATTTGAATTCTACAATAAGTATGCACTGAAAAAGGGATTTGCTGGTCGAAGATGGAATGTTCTAAAAAATAAAAGAGGAGAGGTTACCCAGCAAGAATTTGTGTGTTACAAGGAGGGATTTCGTGACAAGAAACACTTAGAGAGGACCGGTCGAAAGCGAGAGCCGAGAGCAATGGCAAGGTGTGGTTGTCCAGCTATTTGTTGTGTGCGTCTCGATCGAGAAAGTGGTCGATGGAGGGTGAAAGCATTTAATGATGTTCATAGTCATGAGTTGTTAGGTGAAAAGTATGTACGGATGTTGCCCGCACACAGAAAGATGAATGATTGTGACGTAATGCAAATGAATAGTATGAGGGAGGCAGGTATTGGTGTAACACAAATATATGGGTTAGCAGCTAAGCATTGTGGGGGTTACAATAGGAATGGTTATAGGAAGAGAGATATGTACAATGAAATAGTAAGAGAAAGACGTATCAAAGTTAGTGATGCTAGATCCACTTTATCCTACTTGAGTGGATTGGGTCGGTCAGACACAGACCTATATTGGAGACACACTGTTGATGAAGAAGGGAGACTTCATCACTTATTTTGGTGTGATGGTAGAAGTCAATCTGATTACAGGGTTTTTGGAGATGTTGTTGCATTTGATGCAACGTATCGCCGAAACAAATACATGTGTCCGTTTGTTGTCTTTGCGGGTGTCAACAATCATAACCAGACAATTGTTTTTGGTTGTGGGCTGGTGGCTAATGAGACAGAGGAGACATACGTTTGGCTACTAAAACAATTCTTGGATGCCATGAAAGGTAAATTTCCAATATCTGTGATAACGGATGGTGATCTTACAATGAGAAATGCCATTAAAAATGTTTTTCCGAGTGCACACCATAGGTTGTGTGCATGGCACTTGTTACGCAATGCTACAAGTAATGTAAGTCAAGCAAGTTTCACAGCAAAGTTCAGAAGATGCATGCTTGGTGATTATGAAGTAGGTACCTTTAGGCGGAAGTGGGAAGAGATGGTTGGTGAATTTGGTTTGGAGGGTAATGAATGGGTTCGAGAATTGTATGAAAAGAGGAAAATGTGGGCAACTGCGCACATTCGTGGCAACTTCTTTGCGGGTTTCAGGACAACCTCAAGATGTGAAGGGCTTAATTCTCAAATTGGCAGGTATGTTCATGTTAGAAATAATTTGACCGATTTTTTGAAACAATTCAGTAGGTATATGGCCTACACTAGGCAAAGAGAGCTTGAGGCGGACTTTGAGTCAATTGTTGGGCATCCTGTGTTGTTGACACCTCTACAAGATATAGAGCGCTTTGCAGCTAGGGTATACACTCGTAAGGTGCTTTTTATGTTTCGGACTGTCCTTAATAGAGCATCGAAGTTAAAGGTTTTGTCGTTCATGGAAACACCTGCATCTGTTGTGTACATTGTTGGCAAAAGATTAAGTAATGTGCAGGTATGGAATGTTTCTTTGGTTTCATCAACATCTCAAGTGAAGTGCACCTGTCAGAGGATGGAGTCTAATGGAATCCCGTGTGAACACATAATCACAATTTTGCATTATTTGGATGTGTCGGAGTTGCCCGATTGTCTTGTATTGCCTAGGTGGACCAAATATGCAAAGCAATGTGTTGAAGGAAGTAATGGTGAAGGTGCTACAATGACAGATACAAATTTTAGGAACGGTATGGTGGCTCTATTATTTGATTGCCATGAAATGTGTAGACTTGCAGGCAGAAATATCGACAAGTTAAATACAACACAAGAACTTGTTAGAAAACATGTGATGACTTTGAAGGAAGGTTCGGATGCAGAAAGTTCAGATGATGGAAATGAAACTGATGCTGAATATGCGAATGTTCGGGATCCTGTGCGTGTGAGGACTAAAGGGTGTGGTACGAGACAGCAAGCATCAAACAGAAGAGGTGATAGGAGGTCTAATTGTTGCAGTGTATGCCAACGGCCAGGGCATAATAAGACGACGTGCCCAGAACGAGCAGAACCATCCAATGGTCGCAGGAGTAGAGAGGCAAATGACAATGATACTACAGACGTCCCAATGACGGATGTAGGTGGTGGAAACGGCAGAGGACGGGAGCATTGGCAGAACATTTGTAAAGCTGGTGTTGAATACATATGA 2418 0.4152 MEDPIGGRSDLYDENNASEGGEGMSSSNGNNVDNENDGVDGEGEHMYEHSDAEVDVDEYRIDNKSDIKRVQFLSLTIEEFKLYHFFIRLVAFEFYNKYALKKGFAGRRWNVLKNKRGEVTQQEFVCYKEGFRDKKHLERTGRKREPRAMARCGCPAICCVRLDRESGRWRVKAFNDVHSHELLGEKYVRMLPAHRKMNDCDVMQMNSMREAGIGVTQIYGLAAKHCGGYNRNGYRKRDMYNEIVRERRIKVSDARSTLSYLSGLGRSDTDLYWRHTVDEEGRLHHLFWCDGRSQSDYRVFGDVVAFDATYRRNKYMCPFVVFAGVNNHNQTIVFGCGLVANETEETYVWLLKQFLDAMKGKFPISVITDGDLTMRNAIKNVFPSAHHRLCAWHLLRNATSNVSQASFTAKFRRCMLGDYEVGTFRRKWEEMVGEFGLEGNEWVRELYEKRKMWATAHIRGNFFAGFRTTSRCEGLNSQIGRYVHVRNNLTDFLKQFSRYMAYTRQRELEADFESIVGHPVLLTPLQDIERFAARVYTRKVLFMFRTVLNRASKLKVLSFMETPASVVYIVGKRLSNVQVWNVSLVSSTSQVKCTCQRMESNGIPCEHIITILHYLDVSELPDCLVLPRWTKYAKQCVEGSNGEGATMTDTNFRNGMVALLFDCHEMCRLAGRNIDKLNTTQELVRKHVMTLKEGSDAESSDDGNETDAEYANVRDPVRVRTKGCGTRQQASNRRGDRRSNCCSVCQRPGHNKTTCPERAEPSNGRRSREANDNDTTDVPMTDVGGGNGRGREHWQNICKAGVEYI. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02310 805 MobiDBLite consensus disorder prediction 759 775 - -
Seca5g02310 805 MobiDBLite consensus disorder prediction 19 35 - -
Seca5g02310 805 Pfam SWIM zinc finger 577 615 IPR007527 GO:0008270
Seca5g02310 805 Pfam FAR1 DNA-binding domain 93 183 IPR004330 -
Seca5g02310 805 MobiDBLite consensus disorder prediction 724 758 - -
Seca5g02310 805 MobiDBLite consensus disorder prediction 691 792 - -
Seca5g02310 805 SMART 26again6 591 618 IPR006564 GO:0008270
Seca5g02310 805 MobiDBLite consensus disorder prediction 1 44 - -
Seca5g02310 805 Pfam MULE transposase domain 303 397 IPR018289 -
Seca5g02310 805 PANTHER OS01G0519700 PROTEIN 92 757 - -
Seca5g02310 805 ProSiteProfiles Zinc finger SWIM-type profile. 580 616 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02310 Seca-Chr5 64564329 64567059 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02310 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02310 - - tpra:123913749 702.975