Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02300 ATGGATTGTTGTGTCTGCACAACTATGCCATTGATATTAAGGCCTCCAAGGAATACAATATGTGGGGCTTGTTATGAAGGAGTTAGAAGCATAATCAACATGATGAATAGTATGGAAAGTGAGAAAGCAAAAGTAGTCACTAATCCAAATGGTTCTCCAGTTTCAAGGCGAAATTCGAGTAAGACACTTGATGATTGTATAAGATGGTGTTCAGAGCAGATAGAACAGTTCAATCAACAGAAAGAAGACTTAGCTTTCCTCAGAGGCTTTGTTGCTGCATTCAAAGCACAGATTCACACTGATATACTGGTCAATCCAGGCAACCTTGGTCCACCTATACCTGCACATAAGTCTGTTTTGGCGGCAAGATCAGAAATTTTCAAGAACATGCTAGAGTGTGATGAATGCAAAGCTCCAGCCAGTAACACCATAACTATACCGGATTTGAACCATGATGAATTAGAGTCTCTTCTGGAGTTTCTCTACAGTGGGACCTTAGCTGTGGAAAAGTTGGAGAAACATGTGTATGCCTTGTCACAAGCAGCTGATAAGTATGTTATCCCACACTTGCTGAAATACTGTGAAAAATACCTGCTGAGTTCACTTAGCACCTCTAATGCACTTGAGACACTAGAGATTGCTGACACTTGTTCCAACCACAACTTGAAGGAGACAACCTTGAATTTCTTAGTTAAGAACATTGAGCATATGGTGTCCTCCCCTAAATTTGAAGCTTTTGTACACAGGAGTCCACATCTAACTGTGCAACTAGTTACAAGGGCATTCGTGAATGGTTCCAAATAA 804 0.4055 MDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMNSMESEKAKVVTNPNGSPVSRRNSSKTLDDCIRWCSEQIEQFNQQKEDLAFLRGFVAAFKAQIHTDILVNPGNLGPPIPAHKSVLAARSEIFKNMLECDECKAPASNTITIPDLNHDELESLLEFLYSGTLAVEKLEKHVYALSQAADKYVIPHLLKYCEKYLLSSLSTSNALETLEIADTCSNHNLKETTLNFLVKNIEHMVSSPKFEAFVHRSPHLTVQLVTRAFVNGSK. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02300 267 CDD BACK 203 243 - -
Seca5g02300 267 CDD BTB_POZ_ZBTB_KLHL-like 99 185 - -
Seca5g02300 267 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 266 IPR044784 -
Seca5g02300 267 Pfam BTB/POZ domain 95 201 IPR000210 GO:0005515
Seca5g02300 267 Gene3D - 203 266 - -
Seca5g02300 267 Gene3D Potassium Channel Kv1.1; Chain A 68 202 IPR011333 -
Seca5g02300 267 SUPERFAMILY POZ domain 86 200 IPR011333 -
Seca5g02300 267 ProSiteProfiles BTB domain profile. 100 170 IPR000210 GO:0005515
Seca5g02300 267 SMART BTB_4 100 202 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02300 Seca-Chr5 64471501 64473100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca5g02300 BTB 6.7e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02300 K10523 - gmx:100814664 495.352