Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02289 ATGACGTCTGCCCCAAGTTTCTCTGGTTCACCGTCTTGCGAAATCATGAATGTGTCATCAATTCCAGTTGCTGAAGGTGTAGAGAAATGGGTCAACGATATTCACAACAATATTGTGCAACATGGAAAAGAATGTGTTGTTGACTATGCACCACAATTGGGAATGGAGTTTGAATCAGAGGTTGTGGCCTATAAATTTTACAATGAGTATAGTAAGAGAGTTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGACGGAATTTTGACTTCAAGAAGATTCTCATGCTTCAAGGAGGGTAAACGAAGCGTTGACAAACGTGACCACTTGACAAAAGAGCCTAGAGCAGAAACCAGAACAGGATGTGAAGCACGTATGGTTATTTCACTTGATCGGAAGATAGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCACCCTCTTCAATCTCCAGAATATGCCTATATGATTCGCTCTCATCGAAATATTTCTGAGTCACAAGCATCACAAATTGTATTGGCGGATGAATCTGGGTTAAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAAACAATGTTGGTTATACAAGACAAGACCTCAAGAATTACCTTCGGACTAAAAGGAATCAGTCTTTAAGGTATGGTGAAGTTGGTGCATTGTTGATGTACTTCAAACAACGAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCAGATGCACAAATGATAAATGATTATGGATACTTTGGTGATGTCATCACTTTTGACACCACATACAAGACAAATAAGGATTACCGACCCCTAGGAGTATTTGTTGGGCTTAATAATCATAGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAACCATCCCTTCTTTTCAATGGTTATTTGAAACTTTCCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACAATTCTAACAGATCAAGATGCAGCAATGGCAAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATTAGAGAAAATGCCCTAAGACATGTGAACCATCTTTATCAAAAGAGTTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAGGAAGGTGAATTTCTGAATGCATGGAATGATTTACTTGTTGATCATAATGTTTCCGATGACTCATGGCTACATGGGATTTTTCGAGTGAAGGAAAAGTGGGCATGGGCTTATGTTCGAAAAACTTTCACGGCAGGTATGAGATCAACTCAATTAAGTGAGAGCTTTAATGCTGATCTGAAAAACCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTCACACACTTTGAAAGAGTTGTAAATGGAAAAAGGAACAATGAGTCAGAAGCCGAATATGAGTCAAGACATAAGCTTCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTGCAAGCTGGAAACATTTACACTCCAAAGCTTTTTCAGGAGTTCCAAGAGGAATATGAGGAATTTCAAGGCACTTGCATAAAGGAATTGAAAGAAGGGTTCTATATTGTTACAAATTATGATAACATTAAGGAACGGATAGTAGTGGGGAATGTGGTGGATCAAAAGGTTACATGTGATTGTCGGAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATCAAGTTAATTCCTCAGCACTATATACTAAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAACCGAGATTGGAAAGGACAACATATTGAGTTGGACATAAAAGCCCATTTCACGAAGAGATATAATGCGTTATGTCCTCGAATGATTAAATTGACAGATAGAGCATCTGAATCTCATGAAACATATACCTTTTTGTCCAAAGTTTGTGAAGAGTCCAACAAAATAATTAATGTTATGTTGGCTGCAACATCTATGGGTGGAGAATCAATGGGAAAGTGTGATGTATCCATATCAATTGCAAATGAGAAAATTGACAACAATGTGAACAACATTGATTTTGGTGGGGCGAAAGGCATAAAGAAGCGAGATTCCTCACATAAGGGTAAAAAACGACCTAAATCTTGGGTTGAGAAGTTGGCTCGAAAAAGAAAGGCAAACCTAGCACAAAAAAAGAGAAAGACTCAAGAAAATTTGGAACAATTTGTAGCAACAAGTGATGGTATACATTCTTTTGATACAAGTCATACTTTTACTCAGTTGTTAACACAACCACTACACTGCATGCCAATTTCTCAAACTTCGGATCATATAAATGAGAGTGGTAGTCAATATGGAAGTGGGATCCAAGTTTTGAATGCAAGTCAACCTGAGAATGTAAGACTTTATCTGAATTTAAATGAAGCTGACAATGGAAATCAACATGGGAATACAATCCAAATGACACAATCAAGTCAAGTTCAAGGTGCATTAGACCTACACAACTTCATCTAG 2538 0.37 MTSAPSFSGSPSCEIMNVSSIPVAEGVEKWVNDIHNNIVQHGKECVVDYAPQLGMEFESEVVAYKFYNEYSKRVGFGIRREYGNKSKKDGILTSRRFSCFKEGKRSVDKRDHLTKEPRAETRTGCEARMVISLDRKIGKYKVIDFVAQHNHPLQSPEYAYMIRSHRNISESQASQIVLADESGLKPKDFHEYVSKQVGGINNVGYTRQDLKNYLRTKRNQSLRYGEVGALLMYFKQRSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNHRQTIVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSDFEACIDLHEEEGEFLNAWNDLLVDHNVSDDSWLHGIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFERVVNGKRNNESEAEYESRHKLPRLKMKKAPMLVQAGNIYTPKLFQEFQEEYEEFQGTCIKELKEGFYIVTNYDNIKERIVVGNVVDQKVTCDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNRDWKGQHIELDIKAHFTKRYNALCPRMIKLTDRASESHETYTFLSKVCEESNKIINVMLAATSMGGESMGKCDVSISIANEKIDNNVNNIDFGGAKGIKKRDSSHKGKKRPKSWVEKLARKRKANLAQKKRKTQENLEQFVATSDGIHSFDTSHTFTQLLTQPLHCMPISQTSDHINESGSQYGSGIQVLNASQPENVRLYLNLNEADNGNQHGNTIQMTQSSQVQGALDLHNFI. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02289 845 Pfam FAR1 DNA-binding domain 65 154 IPR004330 -
Seca5g02289 845 Pfam SWIM zinc finger 561 585 IPR007527 GO:0008270
Seca5g02289 845 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 663 IPR031052 GO:0006355
Seca5g02289 845 Coils Coil 733 753 - -
Seca5g02289 845 ProSiteProfiles Zinc finger SWIM-type profile. 540 588 IPR007527 GO:0008270
Seca5g02289 845 ProSiteProfiles WRKY domain profile. 80 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g02289 845 SMART 26again6 563 590 IPR006564 GO:0008270
Seca5g02289 845 Pfam MULE transposase domain 275 369 IPR018289 -
Seca5g02289 845 MobiDBLite consensus disorder prediction 704 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02289 Seca-Chr5 64197949 64201402 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02289 MULE 1.1e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02289 - - tpra:123895462 1139.02