Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g02278 | ATGATGGAGAAATCCAATGTGGCTTCAAAATGCTTTGGCCATTACCCTTTTCAGATTTCGCAACTTGGGGTGAGAAATGCAGCAGATGGTCTCCATAACAAGAAAGAAAGATGGAAGATTATTCTGTCTCAGACACACAACAACCCATTACAGTTGTTTCTCTGGTGGTTCTTTTGGGTTCACATTCTTATGCTCCCTATGTGTGTGAAATCAGGTTTAGGTGAAGATGAGCGTTGGGATGGAGTGGTTGTGACAGAGTCTAATTTCTTAGCACTTCAAGCATTCAAGCAAGAATTGGTTGATCCAAGAGGTTTCTTGCGGAGCTGGAATGATAGTGGGTATGGAGCTTGTTCTGGTGGTTGGGTTGGTATTAAGTGTGCTAAGGGACAGGTTATTGTAATTCAGCTTCCATGGAAGGGATTGAAGGGGCAAATCACTGAGAGGATTGGTCAACTTCAGGGTCTTAGGAAACTTAGTCTTCATGATAACCAAATTAGTGGTTCAATCCCTTCAGCATTGGGACTTCTTCCCAACCTTAGAGGGGTTCAGCTATTCAACAATAGGCTAACAGGGTCTATCCCTCCTTCCTTAGGTTATTGCCCTTTACTTCAATCTCTTGATCTTAGTAACAATTTGCTCACAGGAACAATCCCTGATAGCATTGCCAATTCCACTAAGCTTTATTGGCTTAACTTAAGCTTTAATTCCTTCTCTGGTTCAATACCAGCTAGCTTGACTCACTCAGTTTCTCTTACATTCCTTTCCCTTCAACACAATAATCTCTCTGGTTCACTTCCTAACTCATGGGGTGGTAGTCTTAAGAATGATTTCTTTCGGCTTCAAAATTTAATCCTAGATCATAACTTCTTCACTGGAAGTATTCCTTCTTCTTTGGGCCGGTTAAGCCAACTCAGAGAGATTTCACTTAGTCATAACAAGTTTAGTGGTACTGTACCAAATGAAATAGGAACACTTTCTATGCTTAAAACATTAGACTTTTCTAATAATGCCTTGAATGGGAGCTTGCCTCATACCCTTTCTAATTTAACATCACTTACAGTGCTGAATGCTGATAACAACCACCTTGACAATCAAATTCCAGAAGCTTTAGGAAGATTACATAATCTTTCTGTTCTGATTTTGAGTAGAAACCAATTTAGTGGTCATATTCCTGCAAGTATTGCAAACATCTCCACGCTTAAGCAGCTTGACTTGTCACTAAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACACTGAACATAGTCTTAATCTCTTCAATGTTTCTTACAATAACCTCTCAGGTCCTGTTCCTACTCTACTTGCCAAGAAATTTAACTCTAGCTCATTTGTGGGAAATATTCAACTATGTGGGTACAGTCCTTCAACCCCATGTCCTTCACTAGCTCCATCAGAAGGAGTCATTGCTCCACCTCCTGAAGTGTCAAAACACCAACATCATAGGAAACTAAGTACCAAAGACATAATTCTCATAGCAGCAGGATCTCTCCTCATAGTTCTTGTAACACTTTGTTGCATCCTACTCTTCTGCCTGATCAGAAGAAGAGCAACATCAAAGGAATCAAATGGCCGAGCCACGGGGAGAGCTGCTGCTATGAGCACAGAGAAAGGAGTCCCTCCTGTTGCTGCTGGTGAGGTTGATGCAAGTGGTGAGGCAGGAGGGAAACTAGTTCATTTTGATGGAGCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTACATTGGAGGATGGAAGTCAAGTTGCTGTAAAGAGATTGAGGGAAAAGATCACTAAAAGTCAGAGAGAATTTGAATCAGAAGTTAGTGTTCTAGGGAAAATTAGACACCCATATCTTTTGGCTCTAAGGGCCTATTATGTAGGACCTAAAGGGGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTCTTGCTTCCTTCCTACATGGTAGTGGACCTGGAACAGACATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTTCATTCCCAAGAGAACATTATACATGGAAACCTTACATCAAGCAATGTCTTGCTTGATGAGAACACAGATGTTAAAATTGCAGATTTTGGTCTTTCTCGGTTGATGACACCTGCTGCTAATTCTAATGTCATAGCTACTGCTGGAGCATTAGGCTACAGGGCACCTGAACTCTCTAAGCTTAAGAAAGCCAACACTAAAACTGATATCTACAGTTTTGGTGTAATCTTGTTAGAACTCTTAACAAGGAAGTCACCTGGGGTGCCTATGAATGGCTTAGATTTACCTCAGTGGGTTGCTTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGTGGAGTTGATGAGAGATGCATCAACAACAGTTGGTGATGAGTTGCTAAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCAAGACCAGAAGTTCAACAAGTGCTTCAGCAACTAGAAGAGATTAGACCAGAGAGATCAGTCAGTTCTGGGGACGATTTTAACACCATGTAG | 2604 | 0.4136 | MMEKSNVASKCFGHYPFQISQLGVRNAADGLHNKKERWKIILSQTHNNPLQLFLWWFFWVHILMLPMCVKSGLGEDERWDGVVVTESNFLALQAFKQELVDPRGFLRSWNDSGYGACSGGWVGIKCAKGQVIVIQLPWKGLKGQITERIGQLQGLRKLSLHDNQISGSIPSALGLLPNLRGVQLFNNRLTGSIPPSLGYCPLLQSLDLSNNLLTGTIPDSIANSTKLYWLNLSFNSFSGSIPASLTHSVSLTFLSLQHNNLSGSLPNSWGGSLKNDFFRLQNLILDHNFFTGSIPSSLGRLSQLREISLSHNKFSGTVPNEIGTLSMLKTLDFSNNALNGSLPHTLSNLTSLTVLNADNNHLDNQIPEALGRLHNLSVLILSRNQFSGHIPASIANISTLKQLDLSLNNLSGEIPVSFDTEHSLNLFNVSYNNLSGPVPTLLAKKFNSSSFVGNIQLCGYSPSTPCPSLAPSEGVIAPPPEVSKHQHHRKLSTKDIILIAAGSLLIVLVTLCCILLFCLIRRRATSKESNGRATGRAAAMSTEKGVPPVAAGEVDASGEAGGKLVHFDGAIAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQREFESEVSVLGKIRHPYLLALRAYYVGPKGEKLLVFDYMPKGSLASFLHGSGPGTDIDWPTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTDVKIADFGLSRLMTPAANSNVIATAGALGYRAPELSKLKKANTKTDIYSFGVILLELLTRKSPGVPMNGLDLPQWVASIVKEEWTNEVFDVELMRDASTTVGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPERSVSSGDDFNTM. | 868 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g02278 | 867 | ProSiteProfiles | Leucine-rich repeat profile. | 154 | 176 | IPR001611 | GO:0005515 | |
Seca5g02278 | 867 | Pfam | Leucine rich repeat | 202 | 261 | IPR001611 | GO:0005515 | |
Seca5g02278 | 867 | Pfam | Protein tyrosine and serine/threonine kinase | 583 | 849 | IPR001245 | GO:0004672|GO:0006468 | |
Seca5g02278 | 867 | FunFam | Pollen receptor-like kinase 1 | 657 | 863 | - | - | |
Seca5g02278 | 867 | Gene3D | Transferase(Phosphotransferase) domain 1 | 658 | 865 | - | - | |
Seca5g02278 | 867 | PRINTS | Leucine-rich repeat signature | 325 | 338 | - | - | |
Seca5g02278 | 867 | PRINTS | Leucine-rich repeat signature | 203 | 216 | - | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 176 | 200 | IPR003591 | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 201 | 224 | IPR003591 | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 325 | 348 | IPR003591 | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 249 | 271 | IPR003591 | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 301 | 323 | IPR003591 | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 152 | 175 | IPR003591 | - | |
Seca5g02278 | 867 | SMART | LRR_typ_2 | 349 | 373 | IPR003591 | - | |
Seca5g02278 | 867 | ProSiteProfiles | Protein kinase domain profile. | 580 | 852 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g02278 | 867 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 86 | 241 | - | - | |
Seca5g02278 | 867 | CDD | STKc_IRAK | 586 | 852 | - | - | |
Seca5g02278 | 867 | SUPERFAMILY | Protein kinase-like (PK-like) | 584 | 850 | IPR011009 | - | |
Seca5g02278 | 867 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 273 | 469 | - | - | |
Seca5g02278 | 867 | FunFam | Leucine-rich repeat receptor-like protein kinase | 565 | 656 | - | - | |
Seca5g02278 | 867 | Gene3D | Ribonuclease Inhibitor | 342 | 467 | IPR032675 | - | |
Seca5g02278 | 867 | Gene3D | Ribonuclease Inhibitor | 243 | 341 | IPR032675 | - | |
Seca5g02278 | 867 | Gene3D | Ribonuclease Inhibitor | 86 | 242 | IPR032675 | - | |
Seca5g02278 | 867 | Pfam | Leucine rich repeat N-terminal domain | 90 | 126 | IPR013210 | - | |
Seca5g02278 | 867 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 279 | 852 | - | - | |
Seca5g02278 | 867 | SUPERFAMILY | L domain-like | 125 | 468 | - | - | |
Seca5g02278 | 867 | Gene3D | Phosphorylase Kinase; domain 1 | 586 | 657 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g02278 | Seca-Chr5 | 63991214 | 63994159 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g02278 | 79 | 854 | Receptor kinase-like Gene Family | AT3G51740 | 63.776 | 0.0 | 948 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Seca5g02278 | PK_Tyr_Ser-Thr | 4.6e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g02278 | - | - | aprc:113851294 | 1377.84 |