Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02278 ATGATGGAGAAATCCAATGTGGCTTCAAAATGCTTTGGCCATTACCCTTTTCAGATTTCGCAACTTGGGGTGAGAAATGCAGCAGATGGTCTCCATAACAAGAAAGAAAGATGGAAGATTATTCTGTCTCAGACACACAACAACCCATTACAGTTGTTTCTCTGGTGGTTCTTTTGGGTTCACATTCTTATGCTCCCTATGTGTGTGAAATCAGGTTTAGGTGAAGATGAGCGTTGGGATGGAGTGGTTGTGACAGAGTCTAATTTCTTAGCACTTCAAGCATTCAAGCAAGAATTGGTTGATCCAAGAGGTTTCTTGCGGAGCTGGAATGATAGTGGGTATGGAGCTTGTTCTGGTGGTTGGGTTGGTATTAAGTGTGCTAAGGGACAGGTTATTGTAATTCAGCTTCCATGGAAGGGATTGAAGGGGCAAATCACTGAGAGGATTGGTCAACTTCAGGGTCTTAGGAAACTTAGTCTTCATGATAACCAAATTAGTGGTTCAATCCCTTCAGCATTGGGACTTCTTCCCAACCTTAGAGGGGTTCAGCTATTCAACAATAGGCTAACAGGGTCTATCCCTCCTTCCTTAGGTTATTGCCCTTTACTTCAATCTCTTGATCTTAGTAACAATTTGCTCACAGGAACAATCCCTGATAGCATTGCCAATTCCACTAAGCTTTATTGGCTTAACTTAAGCTTTAATTCCTTCTCTGGTTCAATACCAGCTAGCTTGACTCACTCAGTTTCTCTTACATTCCTTTCCCTTCAACACAATAATCTCTCTGGTTCACTTCCTAACTCATGGGGTGGTAGTCTTAAGAATGATTTCTTTCGGCTTCAAAATTTAATCCTAGATCATAACTTCTTCACTGGAAGTATTCCTTCTTCTTTGGGCCGGTTAAGCCAACTCAGAGAGATTTCACTTAGTCATAACAAGTTTAGTGGTACTGTACCAAATGAAATAGGAACACTTTCTATGCTTAAAACATTAGACTTTTCTAATAATGCCTTGAATGGGAGCTTGCCTCATACCCTTTCTAATTTAACATCACTTACAGTGCTGAATGCTGATAACAACCACCTTGACAATCAAATTCCAGAAGCTTTAGGAAGATTACATAATCTTTCTGTTCTGATTTTGAGTAGAAACCAATTTAGTGGTCATATTCCTGCAAGTATTGCAAACATCTCCACGCTTAAGCAGCTTGACTTGTCACTAAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACACTGAACATAGTCTTAATCTCTTCAATGTTTCTTACAATAACCTCTCAGGTCCTGTTCCTACTCTACTTGCCAAGAAATTTAACTCTAGCTCATTTGTGGGAAATATTCAACTATGTGGGTACAGTCCTTCAACCCCATGTCCTTCACTAGCTCCATCAGAAGGAGTCATTGCTCCACCTCCTGAAGTGTCAAAACACCAACATCATAGGAAACTAAGTACCAAAGACATAATTCTCATAGCAGCAGGATCTCTCCTCATAGTTCTTGTAACACTTTGTTGCATCCTACTCTTCTGCCTGATCAGAAGAAGAGCAACATCAAAGGAATCAAATGGCCGAGCCACGGGGAGAGCTGCTGCTATGAGCACAGAGAAAGGAGTCCCTCCTGTTGCTGCTGGTGAGGTTGATGCAAGTGGTGAGGCAGGAGGGAAACTAGTTCATTTTGATGGAGCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTACATTGGAGGATGGAAGTCAAGTTGCTGTAAAGAGATTGAGGGAAAAGATCACTAAAAGTCAGAGAGAATTTGAATCAGAAGTTAGTGTTCTAGGGAAAATTAGACACCCATATCTTTTGGCTCTAAGGGCCTATTATGTAGGACCTAAAGGGGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTCTTGCTTCCTTCCTACATGGTAGTGGACCTGGAACAGACATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTTCATTCCCAAGAGAACATTATACATGGAAACCTTACATCAAGCAATGTCTTGCTTGATGAGAACACAGATGTTAAAATTGCAGATTTTGGTCTTTCTCGGTTGATGACACCTGCTGCTAATTCTAATGTCATAGCTACTGCTGGAGCATTAGGCTACAGGGCACCTGAACTCTCTAAGCTTAAGAAAGCCAACACTAAAACTGATATCTACAGTTTTGGTGTAATCTTGTTAGAACTCTTAACAAGGAAGTCACCTGGGGTGCCTATGAATGGCTTAGATTTACCTCAGTGGGTTGCTTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGTGGAGTTGATGAGAGATGCATCAACAACAGTTGGTGATGAGTTGCTAAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCAAGACCAGAAGTTCAACAAGTGCTTCAGCAACTAGAAGAGATTAGACCAGAGAGATCAGTCAGTTCTGGGGACGATTTTAACACCATGTAG 2604 0.4136 MMEKSNVASKCFGHYPFQISQLGVRNAADGLHNKKERWKIILSQTHNNPLQLFLWWFFWVHILMLPMCVKSGLGEDERWDGVVVTESNFLALQAFKQELVDPRGFLRSWNDSGYGACSGGWVGIKCAKGQVIVIQLPWKGLKGQITERIGQLQGLRKLSLHDNQISGSIPSALGLLPNLRGVQLFNNRLTGSIPPSLGYCPLLQSLDLSNNLLTGTIPDSIANSTKLYWLNLSFNSFSGSIPASLTHSVSLTFLSLQHNNLSGSLPNSWGGSLKNDFFRLQNLILDHNFFTGSIPSSLGRLSQLREISLSHNKFSGTVPNEIGTLSMLKTLDFSNNALNGSLPHTLSNLTSLTVLNADNNHLDNQIPEALGRLHNLSVLILSRNQFSGHIPASIANISTLKQLDLSLNNLSGEIPVSFDTEHSLNLFNVSYNNLSGPVPTLLAKKFNSSSFVGNIQLCGYSPSTPCPSLAPSEGVIAPPPEVSKHQHHRKLSTKDIILIAAGSLLIVLVTLCCILLFCLIRRRATSKESNGRATGRAAAMSTEKGVPPVAAGEVDASGEAGGKLVHFDGAIAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQREFESEVSVLGKIRHPYLLALRAYYVGPKGEKLLVFDYMPKGSLASFLHGSGPGTDIDWPTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTDVKIADFGLSRLMTPAANSNVIATAGALGYRAPELSKLKKANTKTDIYSFGVILLELLTRKSPGVPMNGLDLPQWVASIVKEEWTNEVFDVELMRDASTTVGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPERSVSSGDDFNTM. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02278 867 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Seca5g02278 867 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Seca5g02278 867 Pfam Protein tyrosine and serine/threonine kinase 583 849 IPR001245 GO:0004672|GO:0006468
Seca5g02278 867 FunFam Pollen receptor-like kinase 1 657 863 - -
Seca5g02278 867 Gene3D Transferase(Phosphotransferase) domain 1 658 865 - -
Seca5g02278 867 PRINTS Leucine-rich repeat signature 325 338 - -
Seca5g02278 867 PRINTS Leucine-rich repeat signature 203 216 - -
Seca5g02278 867 SMART LRR_typ_2 176 200 IPR003591 -
Seca5g02278 867 SMART LRR_typ_2 201 224 IPR003591 -
Seca5g02278 867 SMART LRR_typ_2 325 348 IPR003591 -
Seca5g02278 867 SMART LRR_typ_2 249 271 IPR003591 -
Seca5g02278 867 SMART LRR_typ_2 301 323 IPR003591 -
Seca5g02278 867 SMART LRR_typ_2 152 175 IPR003591 -
Seca5g02278 867 SMART LRR_typ_2 349 373 IPR003591 -
Seca5g02278 867 ProSiteProfiles Protein kinase domain profile. 580 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02278 867 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 86 241 - -
Seca5g02278 867 CDD STKc_IRAK 586 852 - -
Seca5g02278 867 SUPERFAMILY Protein kinase-like (PK-like) 584 850 IPR011009 -
Seca5g02278 867 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 273 469 - -
Seca5g02278 867 FunFam Leucine-rich repeat receptor-like protein kinase 565 656 - -
Seca5g02278 867 Gene3D Ribonuclease Inhibitor 342 467 IPR032675 -
Seca5g02278 867 Gene3D Ribonuclease Inhibitor 243 341 IPR032675 -
Seca5g02278 867 Gene3D Ribonuclease Inhibitor 86 242 IPR032675 -
Seca5g02278 867 Pfam Leucine rich repeat N-terminal domain 90 126 IPR013210 -
Seca5g02278 867 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 279 852 - -
Seca5g02278 867 SUPERFAMILY L domain-like 125 468 - -
Seca5g02278 867 Gene3D Phosphorylase Kinase; domain 1 586 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02278 Seca-Chr5 63991214 63994159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02278 79 854 Receptor kinase-like Gene Family AT3G51740 63.776 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g02278 PK_Tyr_Ser-Thr 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02278 - - aprc:113851294 1377.84