Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02270 ATGAGGGGAGAGGAGGAAGACGCGCTACGTGGACCGCGCAATGGCTTGTCTGTAGGGGCGGGGGTCTGCGCTTCGCTGTGGCGCTTTATTATTTCTTTTCGTGCTTTTTGGATATCCTTTTCACTCAATTGCAGAATTCCCTGGTTGCAGGTGTATGGGCCCAGCATTCTCCCCACCCTCAATCTCGCCGGCGACGTCGTTATCGCCGAGCATCTCTCTCCGCGCCTCGGGAACCTCGGCCATGGAGACTTGGTTCTGGTGCGGTCCCCTTTGAACCCTAATCGGAGCTTGACCAACTGCATCGTCGCCATGAAAGGAGACACAGTCACTTACTTCGACCCTTTGCACGCTGATGCTGCTCAAGTTGCAGTGATGTGTGTGCTTAATGGTTTGTTCTTCGTTTTCTCTTATTGA 414 0.5362 MRGEEEDALRGPRNGLSVGAGVCASLWRFIISFRAFWISFSLNCRIPWLQVYGPSILPTLNLAGDVVIAEHLSPRLGNLGHGDLVLVRSPLNPNRSLTNCIVAMKGDTVTYFDPLHADAAQVAVMCVLNGLFFVFSY. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02270 137 CDD S26_SPase_I 47 107 IPR019533 GO:0004252|GO:0006465
Seca5g02270 137 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 48 120 - -
Seca5g02270 137 Gene3D Umud Fragment, subunit A 45 135 - -
Seca5g02270 137 SUPERFAMILY LexA/Signal peptidase 48 112 IPR036286 -
Seca5g02270 137 Pfam Signal peptidase, peptidase S26 45 112 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02270 Seca-Chr5 63893815 63894228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02270 56 134 MADS-box Gene Family AT1G29960 35.000 1.92e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02270 K09647 - gmx:100527597 114.775