Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02254 ATGGATTCCGACTTCGCCAACAAAGCGTTAACGAGCACGCGTTTTTCCGAGCTGAAGCCGCCACTTTCTGACCCGGTTCTCCAAGCCCTATCGGACTCTGGGTTCGACTTCTGCACACCGGTTCAAGCCGCCACGATTCCTTTGCTATGCAGCTTCAAGGACGTGGCCGTAGACGCCGCCACCGGTTCAGGAAAAACCCTAGCTTTTGTTGTTCCGCTTGTTGAGATTCTTCGCCGCTCCTCTTCTAATCCCAAGCCTCACCAGGTACTAGGAATAATTATATCTCCTACAAGGGAGCTATCGTCCCAAATATATCATGTTGCACAACCTTTCATTTCAACTTTAGTGAATGTTAAGTCCATGCTCCTTGTTGGTGGGGTAGAAGTAAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAATATATTGATTGGCACTCCTGGGCGGCTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGACATGGGGTTCCAAAAGCAGATAACATCCATTATATCTCAATTGCCTAAACTTCGTAGAACCGGTTTATTCTCCGCTACTCAAACTGAGGCTGTAGAAGAGCTTTCCAAAGCCGGATTGAGGAACCCCGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGCAAATGATCCTGCAGCATCAAAACAACTAGAATCTTCAAAGACGCCTTCAGGTCTTCATATTGAGTCACCCTTTTCTTTTATTCATCCGCTTCTTTTCCTTTTGAGTTTGCAGTACTTGGAATGTGAGGCAGATAAGAAGCCATCGCAGCTAGTAGATATCCTCATTAAGAACCGCTCACAAAAAATTATAATATATTTCATGACCTGTGCCTGTGTTGACTATTGGGGAGTTGTCCTTCCTCGCCTTTCTGTTTTGAAAGGCCTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGACGAACTGCTCGGTTGGGTAAGCAAGGACATGCAGTTGTCTTCTTATTGCCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAACATGCTCCGATGATGTTTCTGATGTTGTTCCTCAGATTCGTTCTGCTGCGAAAAAAGACCGTGATGTTATGGAGAAGGGAGTCAGAGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTACTGCAACTTCCTTTAATGCCAGAGGTAAAACATCACTCACTGTCCACTGAGGGATTTGAACCGGTTGGAGATATCAATTTGGAGGATATTAAGTACAGGGATAAATCACGACAGAAACAGAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCAAACAAAACCCCAAATGCACCTACTGTCATGAGGAAGAAAACTGCTCGACAGAGACGTTCTCAGCAGACAATTGAAGATGAGGAAGAATTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAAAAAGGGACCATAGATGAAGATGAATATGCTAAGTTGACAGGAACTGAGGAATTACTTTGA 1818 0.429 MDSDFANKALTSTRFSELKPPLSDPVLQALSDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSNPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNVKSMLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMNRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKSANDPAASKQLESSKTPSGLHIESPFSFIHPLLFLLSLQYLECEADKKPSQLVDILIKNRSQKIIIYFMTCACVDYWGVVLPRLSVLKGLSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERTCSDDVSDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPLMPEVKHHSLSTEGFEPVGDINLEDIKYRDKSRQKQRKKNLQAKKEAKEKEPKPQKPNKTPNAPTVMRKKTARQRRSQQTIEDEEELMQEYRLLKKLKKGTIDEDEYAKLTGTEELL. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02254 605 SMART ultradead3 34 254 IPR014001 -
Seca5g02254 605 Pfam Domain of unknown function (DUF4217) 432 489 IPR025313 -
Seca5g02254 605 Coils Coil 519 539 - -
Seca5g02254 605 Pfam Helicase conserved C-terminal domain 279 391 IPR001650 -
Seca5g02254 605 CDD SF2_C_DEAD 275 400 - -
Seca5g02254 605 CDD DEADc_DDX55 26 224 - -
Seca5g02254 605 Gene3D - 3 227 IPR027417 -
Seca5g02254 605 SMART DUF4217_3 429 492 IPR025313 -
Seca5g02254 605 Gene3D - 270 500 IPR027417 -
Seca5g02254 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 438 IPR001650 -
Seca5g02254 605 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Seca5g02254 605 FunFam RNA helicase 9 227 - -
Seca5g02254 605 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Seca5g02254 605 MobiDBLite consensus disorder prediction 530 544 - -
Seca5g02254 605 MobiDBLite consensus disorder prediction 228 247 - -
Seca5g02254 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 410 IPR027417 -
Seca5g02254 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Seca5g02254 605 MobiDBLite consensus disorder prediction 514 573 - -
Seca5g02254 605 PANTHER RNA HELICASE 11 534 - -
Seca5g02254 605 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Seca5g02254 605 SMART helicmild6 306 391 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02254 Seca-Chr5 63703892 63709726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02254 17 405 Eukaryotic Initiation Factors Gene Family AT1G72730 27.763 6.97e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02254 K14809 - gmx:100801482 1029.62