Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02252 ATGGCTGGAAATTCCCCATGTGCTTCATGCAAGCTGCTGAGACGCCGTTGCGCCAAAGATTGCATCTTTGCTCCTTATTTCCCTTCTGATGATCCTCAAAAGTTCGCCATAGTTCACAAGGTTTTTGGTGCTAGCAACGTTAGCAAAATGCTGCAGGTACCTTACTACCTCTCACTTCTCTTCTCCCTTTTCTTACTCTTAATGATGATAGGTGAATTAAAATTAAAAAAAAGCTTCATAAATACAAAAAAAAAGGGGGGAAAGTCTTGGATGTTTCAGGAACTTCCGGTTCATCAGAGAGCAGATGCAGTAACAAGTCTAGTGTATGAAGCACATGCAAGGGTGAGAGACCCTGTGTATGGTTGTGTTGGAGCCATATCTTACCTTCAAAACCAGGTCTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACATGAACCTGTAATACCAAATCCAGAAATGGACTTAGATCACAAATCATACTTTCTCCAAAATGACCCCCCTCAATACCTCAACTTTGCATCTTCAAGCAATGTAATTCATGATTCTCTCTCAAGAGAGAGCATATTTGGACATGACGTGGTTTCTTGA 618 0.4191 MAGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQVPYYLSLLFSLFLLLMMIGELKLKKSFINTKKKGGKSWMFQELPVHQRADAVTSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVIPNPEMDLDHKSYFLQNDPPQYLNFASSSNVIHDSLSRESIFGHDVVS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02252 205 Coils Coil 126 146 - -
Seca5g02252 205 ProSiteProfiles LOB domain profile. 5 147 IPR004883 -
Seca5g02252 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 166 - -
Seca5g02252 205 Pfam Lateral organ boundaries (LOB) domain 6 52 IPR004883 -
Seca5g02252 205 Pfam Lateral organ boundaries (LOB) domain 91 144 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02252 Seca-Chr5 63635791 63636758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02252 3 172 AS2 family AT2G30130 63.793 2.28e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca5g02252 LOB 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02252 - - gmx:121173085 283.108