Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02248 ATGCTGAAACCATTTGGCATTGCTTTCTCTGTAATTCAATATCAACTTGAAAATTTTGCAAGATTTGGGATGAAATCTAGTTTGATCTTGGCCTATAATCACCATGCCAAGATAATAAGAGGAAGCTGGGAAATAGGAGCAAAAGCATTGCCTCATTGGAATGTTAGTGATTTTTCCTTTGATAAGCTTAATGATTTGTCCAATTCTCTTGTGGGATCAAATCTTCAAATTTTCACTTACAAGGAACTCAAAGAGGTTACATACAATTTTAACAAATCCAACTTTCTTGGGGAAGGTGGGTTTGGGAAGGTATATAAAGGGTTCATTGATGACAAGCTTAGGCCTACTCAGACTTCTCAGGTTGTAGCAGTTAAGGCCTTAAACTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCATTCTGGGGCAGTTGAAGCATCGCCATCTTGTTAATTTAATTGGCTATTTCTTTGAAGATGAGAACAGGCTTCTTGTGTATGAATACATGGAGAGGGGAAATCTTGAGGATAAGTTTTTCAATGGTGTGTGCTTGCATGTCTTTCTCTAA 579 0.38 MLKPFGIAFSVIQYQLENFARFGMKSSLILAYNHHAKIIRGSWEIGAKALPHWNVSDFSFDKLNDLSNSLVGSNLQIFTYKELKEVTYNFNKSNFLGEGGFGKVYKGFIDDKLRPTQTSQVVAVKALNLDGKQGHREWLAEVIILGQLKHRHLVNLIGYFFEDENRLLVYEYMERGNLEDKFFNGVCLHVFL. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02248 192 FunFam Serine/threonine-protein kinase BIK1 57 172 - -
Seca5g02248 192 Pfam Protein tyrosine and serine/threonine kinase 93 181 IPR001245 GO:0004672|GO:0006468
Seca5g02248 192 ProSiteProfiles Protein kinase domain profile. 90 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02248 192 SUPERFAMILY Protein kinase-like (PK-like) 65 186 IPR011009 -
Seca5g02248 192 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Seca5g02248 192 Gene3D Phosphorylase Kinase; domain 1 55 172 - -
Seca5g02248 192 PANTHER OS01G0588500 PROTEIN-RELATED 69 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02248 Seca-Chr5 63556151 63558834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02248 61 184 Glycoside Hydrolase AT3G07070 44.355 6.27e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca5g02248 PK_Tyr_Ser-Thr 2.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02248 - - gmx:100790454 209.534