Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02245 ATGAGCAACAACTGGAAATTCAGCCGCTTCAGGGACTTTCGTGGTGTTCTGTGCCTTCTAGCGCTGTGTTTGTTGTTTCAGAGCTTTGGTTTGTGCTGCTCTCTTAATGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGCAGGGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGTGGTGATTGACCCGTGTAATTGGTTTGGAGTTGAGTGCTCAGATGGAAGAGTGGTTGTCTTGAATTTGAAAGACCTTTGTCTTGAAGGCAATTTGGCACCTGAGCTCGCTAACCTTGTTCATATGAAGTCCATAATTTTGCGGAACAATTCTTTTTATGGGATCATCCCTGAAGGAATTGTACACTTGAATGAATTAGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTCTACCTACAGATCTTGGGAGTAATATGTCGCTGACTATCCTTTTGCTTGACAATAATGATCTTCTTTGTGGTTTCTCTCCTGAAATTAATGAATTGAAGATGCTTTCTGAATCTCAAGTAGATGAAAACCAGCTGATTGGTGCAGAAAAAATGCCTCATTGTATGGGCAGATCCATCACACGGTATGTCATTAATTGTTTGAAATGGATCATCTCTAGTCTACAGTTGCATGTTGGACAAAATAAGAAAGGTCTTCGGATCCTACTGCAAACTCATAATCGTACTCATGAAGATCCTTATAATCGTGAAGCTAATCTTACAAATATTCCTGCTCAATCTCCATCACCTTCCCCATCTGCCTCAGCAACACCCCCAACAGTGCTGAAGCCTCCATCCCCTGATCGAAATGATTCTGCCTCTCCTTCTCCCCCACCTTCACCAGGCTCTACAACACAACTTGAAACTAACTCATCAAAGAATCATCGAGTTTTGGTTGGAGTTGTGGGTGGTGCTGTATTTCTTCTCATTTCAGTCATTGGAATATATCTTTATAGAACCAACAAGGTTGGTAGTGTAAAACCATGGGCCACGGGATTAAGTGGACAGCTTCAGAAGGCATTTGTGACAGGTGTGCCAAAGCTAAAGAGATCAGAACTTGAAGCAGCATGTGAAGATTTTAGTAATGTTATTGGTACTTCACCCATTGGTACAGTGTACAAAGGGACTTTATCTAGAGGAGTTGAAATAGCTGTGGCCTCTGTTATGGTGACATCATCCAAAGATTGGTCAAAGACTTCAGAAGCCCAGTTTCGGACGAAGATAGATGAATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGATATTGTGAAGAAGATGACCCTTTCACCAGAATGGTTGTTTTTGAATATGCCCCAAACGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGGAACAAGACTTAGAATTGCCATGGGCATGGCATACTGCCTGCAACATATGCACCAATTAGACCCTCCTTTGGCCCATAGCAACCTGAATTCTTCAGCTGTCCATCTAACTGATGATTATGCTGCCAAAATTTCGGATTTGAGTTTCTGGAATGAAATGGTTCCAGCTGAGATAGTAAAAGCTGCTGCTGGAAAACACACTGACATGACATTAGCAAGTAACATTTACTGCTTTGGTGTTATATTATTTGAAATGGTAACAGGCCGTCTCCCTTATTCAGTTGATAGTAATGGCTCACTTGAAGACTGGGCTTCACACTATTTACAAGGGGACAAACCCCTCAAAGAAATGGTGGATCCAACTCTAGCATCCTTCCAAGAAGAACAGCTGGAACAAGTTGCTGGTTTGATTCAATCTTGTGTCCACCCTGATCAAGAGAAGAGACCAACAATGGAAGAAGTTTGTGAGAGATTAAGAGAGATAACAAAAATAACTCCAGAAGCAGCTGTTCCAAAACATTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTGTAGAGGCAAGCTGA 1977 0.4153 MSNNWKFSRFRDFRGVLCLLALCLLFQSFGLCCSLNEEGKALLKLKQGIVSDPFGALSNWVDDEVVIDPCNWFGVECSDGRVVVLNLKDLCLEGNLAPELANLVHMKSIILRNNSFYGIIPEGIVHLNELEVLDLGYNNFSGPLPTDLGSNMSLTILLLDNNDLLCGFSPEINELKMLSESQVDENQLIGAEKMPHCMGRSITRYVINCLKWIISSLQLHVGQNKKGLRILLQTHNRTHEDPYNREANLTNIPAQSPSPSPSASATPPTVLKPPSPDRNDSASPSPPPSPGSTTQLETNSSKNHRVLVGVVGGAVFLLISVIGIYLYRTNKVGSVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSPIGTVYKGTLSRGVEIAVASVMVTSSKDWSKTSEAQFRTKIDELSKVNHKNFVNLLGYCEEDDPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWGTRLRIAMGMAYCLQHMHQLDPPLAHSNLNSSAVHLTDDYAAKISDLSFWNEMVPAEIVKAAAGKHTDMTLASNIYCFGVILFEMVTGRLPYSVDSNGSLEDWASHYLQGDKPLKEMVDPTLASFQEEQLEQVAGLIQSCVHPDQEKRPTMEEVCERLREITKITPEAAVPKHSPLWWAELEISSVEAS. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02245 658 Gene3D Transferase(Phosphotransferase) domain 1 450 641 - -
Seca5g02245 658 SUPERFAMILY L domain-like 38 231 - -
Seca5g02245 658 Gene3D Phosphorylase Kinase; domain 1 340 449 - -
Seca5g02245 658 MobiDBLite consensus disorder prediction 239 300 - -
Seca5g02245 658 SUPERFAMILY Protein kinase-like (PK-like) 350 627 IPR011009 -
Seca5g02245 658 ProSiteProfiles Protein kinase domain profile. 367 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02245 658 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Seca5g02245 658 FunFam Inactive receptor-like serine/threonine-protein kinase 341 449 - -
Seca5g02245 658 Pfam Protein tyrosine and serine/threonine kinase 370 627 IPR001245 GO:0004672|GO:0006468
Seca5g02245 658 MobiDBLite consensus disorder prediction 260 291 - -
Seca5g02245 658 FunFam Nuclear pore complex protein NUP107 35 194 - -
Seca5g02245 658 Gene3D Ribonuclease Inhibitor 34 203 IPR032675 -
Seca5g02245 658 PANTHER PROTEIN MALE DISCOVERER 2 17 656 - -
Seca5g02245 658 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02245 Seca-Chr5 63489944 63494329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02245 19 631 Receptor kinase-like Gene Family AT1G66830 25.889 4.41e-47 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca5g02245 PK_Tyr_Ser-Thr 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02245 - - gmx:100784541 969.918