Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02240 ATGATCTCCTCAGAATCTTTACCAACTAAATCTTTGCTAGATTCCTTGATTAACATATCCAATGAAGTTGGCTCAATGGAGAAGTTCCCCTGTGCACATGCAAGGAATGTTACATTCATGATAAGGAGGATCAAGATTCTTTCTTCTTTGTTTGAAGAGATTCAAGTATCTGATAATCCACTTCCTCCCCCTTATATCCTGTGTTTCACTGAGTTCTTTTCTCTGATCAAGAAAGTGAAGCTTTTGATCCAAGACTGCAAGGATGGCAGCTATCTTTGGGGTCTCATACAGTTAGAGTTCATCTCCAACCAATTTTCTGTGCTGACAAAGGAGATGGGAAGGGCCCTTGATATCCTGCCTCTGAATTTGCTTGACATAACAACAGATATAAGAGAACAAGTGGAGCTTCTGCACAAACAGACAAAAAGAGCTGAGTTGTTCATTGATTCTGGAGATCTTCAACTAAGAGATCAGCTCCTACAAGTGATGGCCAACAACAGTTTACCAAACAAGAAGAGCAAAAGCTTTATTGATTTTGGGAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAAGTCCATCAGATTATGATAGAGAAATATCAAAGCTAGAGGCTGAAGCTCAGAATCAAGCAGGCACAGGAGGACTAATGGTGGTCACCAATATAAACAGTCTCTTATCTCTGGTTTCATATTCCAAATCCATGTTATTCAGAGATGGAGAAAATAAAAAACATGAAGGAAACTGCAAGCCACTATCTGAATTCCTATATATTAAAATCCATGATAATTCATCATCTTCTCAGTCCATGACACTTAATATTCCTGATGAATTTCGCTGCTCAATTTCACTTCAACTAATGAGAGACCCTGTGATTGTATCATCTGGGCACACTTATGATCGAAATTCCATTGCACAATGGATAAACTCTGGGCATCATACTTGCCCCAAAAGTGGGCAGAGGTTAACTCACACTGCTCTAATACCCAACTATGCATTGAAGAGTCTTGTCCAGCAATGGTGCTATGAGAACAAGGTACCAGTGAATGATCCTACTTCTTTGCTTTCAGAGGGAAAGAACAGCAAGAAGAATTTGAATAACAATGCTGTTGATTATATTTCTGCAAACAAAGGATCTACAGATGCTATCAAAATGACAGCAGAATTTCTTGTTGGGAAAATGGCAACTGGCTCAGCTGACATCCAAAGGAAAGCTGCATATGAACTTCGGTTACTAGCAAAATCTGGCATGGATAATCGAAGAATTATAGCTGAGGCTGGGGCTATTCCATTTCTAGTGACACTATTAGGTTCCCAAGATCCAAGAATCCAGGAACATGCAGTGACAGCCTTGTTTAACCTCTCTATCTTTGACAACAATAAGATTTTGATAATGGCAGCTGGAGCAGTAGAAAATATAATAGGATTACTGGAAGCAGGGAAGACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTCAGCCTGTCTATGGTAGATGATAGCAAAGTAACAATTGGAGCTCATCCAAGGGCCATTCCTGCCTTAGTTGGACTCCTTAAAGAAGGAACTCCTACTGGGAAAAGAGATGCTGCTACTGCACTTTTCAATCTTGCAGTTTACAAGCATAACAAGGCAAGCATTGTCAATGCTGGGGCAGTTACTTTGCTCATTGACTTGCTGATGGATGATAAGGCTGGCATAACAGATGATGCCTTGGCAGTGCTTGCTTTACTTCTGGGATGCTCTGAAGGGCTAGAAGAGATTAGGAATAGTAGAGTGTTGGTGCCTCTTCTTATTGATCTTCTGAGATTTGGGTCAGCCAAAGGGAAGGAAAATTCAATAACTCTCTTACTGGGGTTGTGCAAAGAAGAAGGTGAGCTTGTGGCAAGGCGTCTCTTGGCAAATCCACGGAGTATTCCTTCTCTTCAAAGCTTGGTTGCTGATGGGTCTTTGAGAACTCGAAGAAAGGCTGATGCATTGCTTCGTCTGCTCAATAGGTGCTGCTCACAACCTCATCATTCTGCTTGA 2034 0.411 MISSESLPTKSLLDSLINISNEVGSMEKFPCAHARNVTFMIRRIKILSSLFEEIQVSDNPLPPPYILCFTEFFSLIKKVKLLIQDCKDGSYLWGLIQLEFISNQFSVLTKEMGRALDILPLNLLDITTDIREQVELLHKQTKRAELFIDSGDLQLRDQLLQVMANNSLPNKKSKSFIDFGKVEEILSSIGLRSPSDYDREISKLEAEAQNQAGTGGLMVVTNINSLLSLVSYSKSMLFRDGENKKHEGNCKPLSEFLYIKIHDNSSSSQSMTLNIPDEFRCSISLQLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLTHTALIPNYALKSLVQQWCYENKVPVNDPTSLLSEGKNSKKNLNNNAVDYISANKGSTDAIKMTAEFLVGKMATGSADIQRKAAYELRLLAKSGMDNRRIIAEAGAIPFLVTLLGSQDPRIQEHAVTALFNLSIFDNNKILIMAAGAVENIIGLLEAGKTMEARENAAAAIFSLSMVDDSKVTIGAHPRAIPALVGLLKEGTPTGKRDAATALFNLAVYKHNKASIVNAGAVTLLIDLLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLVADGSLRTRRKADALLRLLNRCCSQPHHSA. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02240 677 Pfam Armadillo/beta-catenin-like repeat 419 456 IPR000225 GO:0005515
Seca5g02240 677 SUPERFAMILY RING/U-box 264 351 - -
Seca5g02240 677 SMART arm_5 542 582 IPR000225 GO:0005515
Seca5g02240 677 SMART arm_5 458 499 IPR000225 GO:0005515
Seca5g02240 677 SMART arm_5 417 457 IPR000225 GO:0005515
Seca5g02240 677 SMART arm_5 501 541 IPR000225 GO:0005515
Seca5g02240 677 SMART arm_5 583 624 IPR000225 GO:0005515
Seca5g02240 677 CDD RING-Ubox_PUB 276 328 IPR045210 -
Seca5g02240 677 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Seca5g02240 677 SUPERFAMILY ARM repeat 389 666 IPR016024 -
Seca5g02240 677 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Seca5g02240 677 FunFam RING-type E3 ubiquitin transferase 483 670 - -
Seca5g02240 677 Gene3D - 360 510 IPR011989 -
Seca5g02240 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 554 IPR000225 GO:0005515
Seca5g02240 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 353 IPR013083 -
Seca5g02240 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Seca5g02240 677 FunFam RING-type E3 ubiquitin transferase 274 348 - -
Seca5g02240 677 Gene3D - 511 676 IPR011989 -
Seca5g02240 677 PANTHER U BOX DOMAIN-CONTAINING 31 671 - -
Seca5g02240 677 Pfam U-box domain 275 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02240 Seca-Chr5 63413204 63415237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02240 11 677 U-box Gene Family AT3G46510 37.741 4.74e-127 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02240 - - gmx:100793498 1026.93