Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02232 ATGAAGGGTTATGAGCCTCGTTCAAGTTCTTCTTGTGCAGCTTGCAAGTTATTGAAAAGAAGATGCATACCCAATTGTATTTTTGCACCTTACTTTCGCTCTGATGAGTGCAAGAAGTTTGCAAAAGTGCACAAAGTATTTGGAGCTAGCAATGTGAGCAAGATCCTCATTGAAGTGCCAGAAGAACAGAGAGAAGACACGGTTAATTCTCTGGCTTATGAAGCAGAGGCAAGGCTAAGAGACCCAGTTTATGGATGCATTGGTGCCATAGCTTTGTTGCAAAGGAAGATGATGGAACTTCAACATGATTTGGCAATTGCAAAGGATCGTCTTGCTAAGTGTCATGCTGCTGCTGCTGTTGTTGCTACCCCTTCTGCTGATATGTTGCATGCTCATGTTAGCTTGCCTCCATTCCCTGATTTTTCCACTTGCAGTGATTTCAGTGATGTGTTCTCCCAAAGCTCTTCTTCTCAATTATTGAGTCGACATGAAACGGTGGATGATTTCAATCAAATCCCATATATATTTTGA 531 0.4181 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMMELQHDLAIAKDRLAKCHAAAAVVATPSADMLHAHVSLPPFPDFSTCSDFSDVFSQSSSSQLLSRHETVDDFNQIPYIF. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02232 176 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Seca5g02232 176 Coils Coil 90 110 - -
Seca5g02232 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 137 - -
Seca5g02232 176 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02232 Seca-Chr5 63323182 63323712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02232 1 141 AS2 family AT3G11090 67.832 2.62e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca5g02232 LOB 7.5e-38 No_clan