Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02227 ATGTCGAGCCCAGAGTCTCGATCATTTAATTGGCACTACACAGAGCTAGACGACAGAGACCTCGAAATCCGAGGCAGGACAGTGTTCTTCATCATCGTACTCTTCTCTATTATCCTTCTCATCACCGTTCTCTTCATCTATACTCGTTGGGTTTGCCGCTACCACCGCCACCTCCCCACCACCACGTTCTCCGCCGCCGTCCACGCGCCGCCGCCTCCGCCGCCTCAGGGTCTGGACCCTGCTTCAATCAAGAAACTGCCCATCATCTTGCACCAGGCGCCGGCAGACCCAGACGGCGGCGCGTGGGAAGAAACAGAGTGCTGCATCTGCTTGGGGGAGTTCAGAGACGGTGAGAAACTGAAGGTGTTGCCAGGGTGTGAACACTATTTCCATTGTGAATGTGTTGATAAGTGGCTAACTCATCAATCTAGTTGTCCACTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCAAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACATCCAATTCTAG 525 0.5238 MSSPESRSFNWHYTELDDRDLEIRGRTVFFIIVLFSIILLITVLFIYTRWVCRYHRHLPTTTFSAAVHAPPPPPPQGLDPASIKKLPIILHQAPADPDGGAWEETECCICLGEFRDGEKLKVLPGCEHYFHCECVDKWLTHQSSCPLCRASLKVESSFPKILIQEPPLRIDIQF. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02227 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Seca5g02227 174 Pfam Ring finger domain 106 149 IPR001841 -
Seca5g02227 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Seca5g02227 174 SMART ring_2 107 148 IPR001841 -
Seca5g02227 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 155 IPR013083 -
Seca5g02227 174 SUPERFAMILY RING/U-box 101 155 - -
Seca5g02227 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02227 Seca-Chr5 63119036 63119560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02227 11 157 C3H Transcription Factor Family AT3G11110 43.421 1.44e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02227 - - gmx:100803278 302.367