Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02226 ATGATAAGAAGAAGATCACCCATTATTAGTGCAGCAAACAGTAGCTGCAGGATGGGGGATAAAAAGCTCAGAAAGCATGGGAGAAACTTTAGAATGGTTTCCATTGTGATGACTATGGAAAATTACTATGATTCTAGCTGGCATCTGGGCACTACTTGGGCTCAATGCAGTGATCATTCTCCTTTTCAAGTACCTACACAAATACTGCCTCAAGTCTCTGCCTCCTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCAGTACCAATTGAAGGGGATAGAGCAGCAAGTGCTTCCAAAAGTCACAGTCAAGCAGAGAAAAGGCGCAGAGATAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTGATTCCAAAGTCTGATAAGCAGATGGACAAGGCAGCTTTATTAGGGAGTGTGATAGACCAAGTGAAGGATCTAAAGAGAAAAGCAATGGATGTTAGCAGAGCCATCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTACGACCATGTTCAAGATGAAAGCTGCACTAAAGTGAATAAATTCAAGGACAATATTGTCATCAAAGCTTCTGTTTGCTGTGATGATAGACCAGAATTGTTCTCTGAACTCATTCAAGTCCTCAAAGGATTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGGATTAAAAGCATATTGGTGCTTTGTTCTAAGGAAAGTGAAGGGGATGTTTGCCTTAGCACTCTCAAACAGTCCCTTAAATCAGCTGTGACTAAAATTGCATCATCATCCATGACATCTAGTTGTCCTACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTTTGTACAGTGA 867 0.4175 MIRRRSPIISAANSSCRMGDKKLRKHGRNFRMVSIVMTMENYYDSSWHLGTTWAQCSDHSPFQVPTQILPQVSASSASLQFGEFHSWPVPIEGDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKQMDKAALLGSVIDQVKDLKRKAMDVSRAITVPTEIDEVSIDYDHVQDESCTKVNKFKDNIVIKASVCCDDRPELFSELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKESEGDVCLSTLKQSLKSAVTKIASSSMTSSCPTRSKRQRFFLPSHFVQ. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02226 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 148 IPR011598 GO:0046983
Seca5g02226 288 Gene3D - 93 156 IPR036638 GO:0046983
Seca5g02226 288 PANTHER TRANSCRIPTION FACTOR BHLH30 92 283 IPR045847 GO:0003700|GO:0006355
Seca5g02226 288 CDD bHLH_AtAIG1_like 94 173 - -
Seca5g02226 288 SMART finulus 104 154 IPR011598 GO:0046983
Seca5g02226 288 Pfam Helix-loop-helix DNA-binding domain 101 148 IPR011598 GO:0046983
Seca5g02226 288 CDD ACT_UUR-ACR-like 195 230 - -
Seca5g02226 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 152 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02226 Seca-Chr5 63079047 63081116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02226 39 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.561 5.87e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g02226 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02226 - - gmx:100799687 450.669