Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02223 ATGAGTAAGCTTCAGAGTGATGCTTTGCGAGAAGCTATCTCAGGAATCATGGCTGATTCCAAGGAGAAAAATCGTAAATTTGTGGAGACTATTGAGCTCCAGATTGGGCTGAAGAACTACGATCCACAGAAGGACAAGCGTTTTAGCGGCTCTGTTAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCCCAACACGTTGAAGAGGCAGAGAAAATAGGATTGGACTGGATGGATGTTGAAGCCTTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCTAAAAAATACCATGCCTTTTTAGCTTCTGAGGCAGTCATCAAGCAGATTCCTCGTCTTTTGGGCCCTGGTCTCAACAAGGCAGGCATGTATCTTTCCTTTTTCTTAAGGATTTTGAACCTTTTGGACATTTTGAGAGTAATTGGAAAGTTCCCTACACTTGTCACTCACCAAGAATCTCTTGAGTCAAAGGTCAATGAGACTAAGGCTATGGTAAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGCAATGTTAGCATGGAGGAAAAGCAAATCTTTCAAAATGTACAACTCAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTATCGGGTCTTTTGA 711 0.4248 MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGMYLSFFLRILNLLDILRVIGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02223 236 FunFam Ribosomal protein L10a 1 119 - -
Seca5g02223 236 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 138 236 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Seca5g02223 236 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 133 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Seca5g02223 236 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 230 - -
Seca5g02223 236 SUPERFAMILY Ribosomal protein L1 3 236 IPR023674 -
Seca5g02223 236 FunFam Ribosomal protein 157 234 - -
Seca5g02223 236 Pfam Ribosomal protein L1p/L10e family 22 131 IPR028364 -
Seca5g02223 236 Pfam Ribosomal protein L1p/L10e family 149 230 IPR028364 -
Seca5g02223 236 Gene3D - 1 119 - -
Seca5g02223 236 Gene3D - 156 234 - -
Seca5g02223 236 CDD Ribosomal_L1 9 235 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02223 Seca-Chr5 63021435 63025287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02223 1 236 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 81.356 5.33e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02223 K02865 - gmx:100808580 390.963