Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02220 ATGTGCATTAGTTCAAAAAGTAAACTTTCTCCCTCAAACCACAACATGGAAAGCAAGTTCCAGAACTCAGTTTTGCTTGAATTAGCAGCATGCAATGATTTTGAGGCTTTCAAAAAGGAAGTAGAAGAGAAGGGTTTTGATGTCAATGAGGAAGGAATTTGGTATGGTAGAAGAATTGCATCAAAGAAGATGGGATATGAAAAGAGGACACCCCTCATGGTTGCTTCTTTGTTTGGAAGCACTAGGGTGATGAAGTATATTATTGAGACTGGCAGGGTTGATGTGAACATGGCCGTTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGCTGGGGGCTCTGAATCCAACCTTGAGATTGTCAAGCTCTTGCTTGATGCTGGGGCAAATTCTGAGAGCCTTGATGCCAGTGGTAATAAGCCTGTTAGTCTGATTGCTCCTGCTTTTAATACTTTGTCCAAATCACGAAGGAAGGCTATGGAGTTGTTGCTCAGAGGTGGGGAGGGAGATCAAATGATCAACCTAGAGATGGAGGAGCAGCTATCAAAAGAAGGAACTGAGAAGAAAGAATATCCTATTGATATATCATTGCCTGACATAAACAATGGTATTTATGGAACAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCTTACACCCATGACTGGACTGAGTGTCCTTTTGTTCATCCGGGGGAGAATGCGAGGAGGAGAGACCCACGGAAGTACCCTTACAGCTGTGTTCCCTGCCCTGAGTTTCGCAAAGGGACTTGCCAGAAGAAAGATGCATGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGATTAGCTGTTCTAGGAAAGTTTGCTTCTTTGCTCACAAGCCTGAAGAGTTACGCCCTGTGTATGTTTCCACTGGATCAGCATTGCCTTCACCAAAATCTTCTTCAGCTAGTGCACTTGATTCAAAAGTGACGAGTCCTTTGTCTCTTAGTTCCTCATCTCTGCCAATGTCAACTGTTTCAAGTTCAACACCACTCATGTCTCCCTTGGCAGCTGTTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAATAAAATCAACCCCACTCCACCTTCATTGCAGCTCCCAGGTAGCCAACTGAAAACTACTTTCAATGCAAGGGATTTTGATCTGGAAATGGAACTGCTTGGTCTTCAAAGATCTTCTAATCAACAGCAGCAACAATTGATAGAAGAGATTGCCCGACTCTCTTCTCCGTCTTTCCAGAACAAGGAATTCAATAGGATTGGTGATTTGAAGCCAACTAACCTTGATGACTTGTTAGGATCTGTTGATACTTCTGTATTATCTCAATTACATGGTCTATCAATGCAACCTTCAACACCTACTCAATTGCAATCTCCAAGTAGACTTCAGCTGCACCAAAACATGAACCATCTTCGGGGAAGTTATCCATCCAACATTGCTTCCTCTCCAGTGAGAAAAACCTCAGCATTTGGGTTTGACTCATCAGCTTCTGTGGCTGCAGCTGTGATGAATTCAAGGTCTGCTGCATTTGCAAAACGAAGCCAAAGTTTTATGGATCGTGGCGTGGCAAGACACCACCATCTTGGTGTGTCTTCTTCAGCTTCCAACCCCACCTGTAGGATGACCTCTGGCCTTTCAGATTGGACTTCACCTAATGGGAAACTGGATTGGGGCATGAATGGACACGAGCTGAACAAGTTGAAAAAATCTGCTTCTTTTGGGTTCAGAAACAATGGGGTAACAACTGCCTCCCCCTTGGTAAAGTCAGAAAATGCTGAACCAGATGTCTCATGGGTTCATTCATTTGTTAAAGATGTTTCCTCTGAGAGTTCTGAGATGTATAGTGCTGAGAAGCTGCATCTTGATCTCCGGAAAGAGATGCTTTCACCATGGATGGAACAGCTGTATATGGAACAAGAGCAGATGGTGGCATAA 2001 0.4418 MCISSKSKLSPSNHNMESKFQNSVLLELAACNDFEAFKKEVEEKGFDVNEEGIWYGRRIASKKMGYEKRTPLMVASLFGSTRVMKYIIETGRVDVNMAVGSDRATALHCAVAGGSESNLEIVKLLLDAGANSESLDASGNKPVSLIAPAFNTLSKSRRKAMELLLRGGEGDQMINLEMEEQLSKEGTEKKEYPIDISLPDINNGIYGTDEFRMYSFKVKPCSRAYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYAHGVFESWLHPAQYRTRLCKDEISCSRKVCFFAHKPEELRPVYVSTGSALPSPKSSSASALDSKVTSPLSLSSSSLPMSTVSSSTPLMSPLAAVSSPKSGSLWQNKINPTPPSLQLPGSQLKTTFNARDFDLEMELLGLQRSSNQQQQQLIEEIARLSSPSFQNKEFNRIGDLKPTNLDDLLGSVDTSVLSQLHGLSMQPSTPTQLQSPSRLQLHQNMNHLRGSYPSNIASSPVRKTSAFGFDSSASVAAAVMNSRSAAFAKRSQSFMDRGVARHHHLGVSSSASNPTCRMTSGLSDWTSPNGKLDWGMNGHELNKLKKSASFGFRNNGVTTASPLVKSENAEPDVSWVHSFVKDVSSESSEMYSAEKLHLDLRKEMLSPWMEQLYMEQEQMVA. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02220 666 SMART ANK_2a 102 134 IPR002110 GO:0005515
Seca5g02220 666 SMART ANK_2a 67 97 IPR002110 GO:0005515
Seca5g02220 666 ProSiteProfiles Zinc finger C3H1-type profile. 250 277 IPR000571 GO:0046872
Seca5g02220 666 SMART c3hfinal6 250 276 IPR000571 GO:0046872
Seca5g02220 666 SMART c3hfinal6 285 308 IPR000571 GO:0046872
Seca5g02220 666 SUPERFAMILY Ankyrin repeat 17 148 IPR036770 -
Seca5g02220 666 PANTHER UNKEMPT FAMILY MEMBER 27 627 IPR045234 -
Seca5g02220 666 ProSiteProfiles Ankyrin repeat profile. 102 137 IPR002110 GO:0005515
Seca5g02220 666 Pfam Ankyrin repeats (3 copies) 28 131 IPR002110 GO:0005515
Seca5g02220 666 ProSiteProfiles Ankyrin repeat region circular profile. 102 136 - -
Seca5g02220 666 FunFam Zinc finger CCCH domain-containing protein 66 208 276 - -
Seca5g02220 666 Gene3D - 3 194 IPR036770 -
Seca5g02220 666 Gene3D - 251 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02220 Seca-Chr5 62873969 62875990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02220 11 661 C2H2 Transcription Factor Family AT5G12850 39.636 1.31e-139 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g02220 Ank_2 8.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02220 - - gmx:100783376 907.131