LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02214	ATGAAGAAACCACCATCTTCCTCCTCCGTCAATGTCACCCTCGCCGTCATAGTTATACTCTCTTTTCTTCCCTCCTCTTATGCTCTAGGCTCCGCCACCACCCTGGCCGTCACCGACGCCTCCGCCACCGTATGCGGCATCGTAGCAGGGGAATCCACACAGCGCATTGAGTGTTACCGTCACGAGCAGATCGTTCCCGTCGTCCCCAACGTTTCCTTTTCCTCCATTTCCGGCGGGAGGGACTATTTCTGCGGCCTCAGGTCCGGTAACTACAGTTTACATTGCTGGAACACTAACACTACCTCTTCTTTCCAAGGAAAAAGGCTTTACAACAATGATTCTGTTCTATTGGAGAATCTTGCAGTTGGGGATGACCAAGTTTGCGCCACGGTGGTGGGTACTGGAACGGTTGAATGTTGGAGAACCAATAGGGCTTTTAATTTGTCATCTGGGTCTGATCAATTTGCTTCGATTTCATCTGGGTATGGTTTCTCTTGTGGAATTCTTAGGAATAGTTCTCGGGTTCAGTGTTGGGGAGAGATGGGTATGGCTAATCGGATAGAGAATGAGTTTGGGAACATGTCTATGTTGAGTCTTGTAGCTGGTGGTTCACATGTTTGTGGGTTGAATTCAACAGGGGTTTTGGTATGCAGAGGAAGTAACAGTTCTGGGCAATTGAATGTTCCCCAAGGTGGGGCTTTTGAGTATGATGGGTTAGCACTAGGAGCTGAGCATGGTTGTGCTATTAGAAGATTGAATGGTTCTGTTGTTTGTTGGGGTGGTAGAGGGCAATTCTCTGTGAATGTTACACAAGGAGTTTCTTTTGAGTTGATTGTTTCTGGGTCCAATTTTACTTGTGGATTGACAACAAGCAATTTTTCAGTGTTGTGTTGGGGCCCTGCTTGGTCTAATGGTAATGGTTCTAGTTCAAGGTTTGAGCTTCCTTTGCCTCGTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGGTATATATCCTGATTCTCAATCTCTATGCTCTGGCTCTGGTCACATTTGCAAGCCAAATACTTGTAGGCCTCAAATAGCAGTGCTGCCACCGCCACCGCCACCGCCGCTGCAACCACCACCGCCCTCTCCTCCGCCATCATCATCTCGATCAAAGACCTTGACAAGGGGCTTATTGGCATTTGCCATTGTTGGATCCGTGGGGGCTTTTGCTGGTATATGCACAATAGTTTATTGCTTATGGAGTGGAGTTTGTTTTGGTAAGAAGAAAGTGCACAATTCTGTGCAACCAACAATCACTAGAGGTAGCAGCAATTCTAGTGGTGGTGGTGCTTCCAATCATAGCCCATCTTCAATAGCATCCACTATTAGGCGTCAGAGTTCAAGAATAATGAGGCGCCAGAGGAGTGGAACCTCATCAACAAAGCACCCAGAAAGGGCTGAAGAGTTCACCCTTTCTGAGCTTATAACAGCCACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGCTTTGGTGTTGTGTACAAAGGCAAACTCACAGATGGTCGTGAGGTAGCAATCAAGAGAGGTGAAACAGGTTCAAAGATGAAGAAGTATCAAGAGAAAGAAAGTGCATTTGAGTCTGAAATTGCCTTCTTGTCACGTTTACACCATAAGCACTTGGTTAGGCTAGTTGGGTACTGTGAAGAGAAAGATGAGAGGCTATTGGTGTATGAGTACATGAAGAATGGAGCATTATATGATCATTTGCATGACAAGAACAATGTGGAAAAGGGTAGCAGTGTCTTGAATTCATGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCAAGAGGAATAGAATATCTACATAACTATGCAGTTCCATCTATAATTCATAGAGATATCAAGTCTTCAAACATCCTTATTGATGCAACTTGGACAGCAAGAGTATCTGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACAGTGAATACAAACCAACAAAAGCAGCAGGAACTCTTGGATACATTGATCCTGAGTACTATGGTCTAAATGTGTTAACAGCAAAGAGTGATGTCTATGGGCTTGGAGTTGTACTACTAGAACTTTTAACAGGAAAGAGAGCTGTATTCAAGCATGGTGAAGATCCATTAAGTGTGGTGGACTTTGCAGTGCCTGCAATTTTGGCTGGAGAATTGGTGAAAATTTTGGACCCAAGGGTTGGTCCACCAGAGTCAAATGAAGCAGAAGCAGTGGAGTTAGTGGCTTATATTGCTATGAATTGTGTGAATTTGGAAGGGAAAGATAGACCAACGATAGCTGATATTGTGGCCAATTTGGAGCGGGCTTTGGTTATTTGTGATGGTAGCCATGACAGCATTTCCAGCATTGCAATCTCTGTTGTTTCAGATTGA	2403	0.4444	MKKPPSSSSVNVTLAVIVILSFLPSSYALGSATTLAVTDASATVCGIVAGESTQRIECYRHEQIVPVVPNVSFSSISGGRDYFCGLRSGNYSLHCWNTNTTSSFQGKRLYNNDSVLLENLAVGDDQVCATVVGTGTVECWRTNRAFNLSSGSDQFASISSGYGFSCGILRNSSRVQCWGEMGMANRIENEFGNMSMLSLVAGGSHVCGLNSTGVLVCRGSNSSGQLNVPQGGAFEYDGLALGAEHGCAIRRLNGSVVCWGGRGQFSVNVTQGVSFELIVSGSNFTCGLTTSNFSVLCWGPAWSNGNGSSSRFELPLPRILPGPCVQSSCSECGIYPDSQSLCSGSGHICKPNTCRPQIAVLPPPPPPPLQPPPPSPPPSSSRSKTLTRGLLAFAIVGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSNSSGGGASNHSPSSIASTIRRQSSRIMRRQRSGTSSTKHPERAEEFTLSELITATNNFSLENKIGAGSFGVVYKGKLTDGREVAIKRGETGSKMKKYQEKESAFESEIAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDSEYKPTKAAGTLGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAVFKHGEDPLSVVDFAVPAILAGELVKILDPRVGPPESNEAEAVELVAYIAMNCVNLEGKDRPTIADIVANLERALVICDGSHDSISSIAISVVSD.	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02214	800	MobiDBLite	consensus disorder prediction	430	469	-	-
	Seca5g02214	800	Gene3D	Transferase(Phosphotransferase) domain 1	575	787	-	-
	Seca5g02214	800	ProSitePatterns	Protein kinases ATP-binding region signature.	500	522	IPR017441	GO:0005524
	Seca5g02214	800	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	625	637	IPR008271	GO:0004672\|GO:0006468
	Seca5g02214	800	FunFam	serine/threonine-protein kinase-like protein CCR1	463	574	-	-
	Seca5g02214	800	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	193	786	IPR044815	GO:0004674
	Seca5g02214	800	SMART	serkin_6	494	780	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02214	800	Pfam	Protein kinase domain	495	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02214	800	MobiDBLite	consensus disorder prediction	360	380	-	-
	Seca5g02214	800	SUPERFAMILY	RCC1/BLIP-II	25	261	IPR009091	-
	Seca5g02214	800	MobiDBLite	consensus disorder prediction	430	478	-	-
	Seca5g02214	800	Gene3D	-	194	350	IPR009091	-
	Seca5g02214	800	Gene3D	-	16	193	IPR009091	-
	Seca5g02214	800	SUPERFAMILY	Protein kinase-like (PK-like)	472	776	IPR011009	-
	Seca5g02214	800	Gene3D	Phosphorylase Kinase; domain 1	453	574	-	-
	Seca5g02214	800	MobiDBLite	consensus disorder prediction	360	383	-	-
	Seca5g02214	800	FunFam	Serine/threonine-protein kinase-like protein CCR4	575	793	-	-
	Seca5g02214	800	ProSiteProfiles	Protein kinase domain profile.	494	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02214	Seca-Chr5	62234612	62237014	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02214	9	800	Receptor kinase-like Gene Family	AT3G55950	61.104	0.0	876

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Seca5g02214		Pkinase	1.4e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02214	-		-	gmx:100786639	1217.22