Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02210 ATGACCTCATCGAACCACCACCTGCCACTATCCGACTCCGACTCTGACGGAGGCCCCTCAACCTCCGAGGCCCTCCGCCATTCCGATCTCTCCGACTCCATATTTAAATCCTACTTCAATTTCTCCGGCCACTCCTCCTCCTCCGCCACCGCCACCGACCTTTCCAAGATCCGTTCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTATCGTGCCTGATATGCCTCGAACGCATCAAGCTCTCCGACCCCACTTGGTCATGCACTTCCCTCTGCTTCGCCGTCTTCCACCTCATCTGCATCCAAAGCTGGGCCCGCCAGGCCTCCGACCTCGCCGCCGCACGCGCCGCCACTCGCCTCCCCATCTCCTCCGACAAGGCCTCCGACACCGCCGTCTGGAACTGCCCCAAATGCAGGGTGGAATACCCCAAATCCCACATCCCCAAAACGTACCTCTGCTTCTGTGGGAAATTGGAGAACCCTCCCAGTGATGATCCATGGGTTTTGCCCCATTCCTGTGGCGACGTTTGTGGAAGGCCATTGAAGCACAATTGCGGGCACCATTGTTTGTTGCTTTGCCATCCCGGGCCTTGCCCCTCCTGCCCTCAACTCGTCAAAGTTCGATGCTTTTGTGGGTCCCACCAAGACACTCGAAGATGCGGGTTCAAGGAATTTTCTTGTGAGAGTCCTTGTTCCAAGGTGTTGGATTGTGGTGTTCACAGGTGCGTTGAGATTTGCCATCGTGGTCCTTGCCCACCATGCCGGATCCGTGGCGTGTATAGCTGCCAATGTGGGAAGAGAAAAGAGGAAAGAGAATGCTGTGATCGTGTTTTCCGATGTGATGATCCTTGTGAGAAAAAGCTTAGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGAATGTGGTGAGTGTCCCTTACAGGGGAAGAGAACATGCCCTTGTGGGAAGAGGGTCTATGAAGGAATACCTTGTGATGCTCCTGTGCAGGTGTGTGGTGCCACCTGTGATAAAATGTTACCCTGCGGGTATCACAGGTGCCCTGAGAGATGCCACCGTGGGCAATGCATTGAGACTTGTAGGACTGTTGTGAAGAAGTGCTGTCGCTGTGGAAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATCTGGCATGTGAAAGGAAGTGTCAGAGGATGCGTGATTGTGGTCGGCATGCCTGCAAACGTCGCTGCTGTGATGGGGATTGCCCTCCCTGCTCAGAGATATGTGGCAGGAGGCTCCGATGCAAGAACCACAAATGCCCTTCTCCATGCCATAGAGGTGCCTGTGCTCCTTGTCCAATAATGGTGACAATTACATGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGCACTGAAACGGATCAAAAGCCACCTAGATGTCCTAAACCATGTCCTATTAAGCCTTTATGCCGGCATGCATTAAACTGCAAGCCACACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGACTACCTTGTGCAGAAGAGTTTCAATGTGGCCATACATGCAAATTAAGGTGCCATGGTGCTAAGCCTCCTCCAAATCCAGAGTTTACTCTCAAACCAAAGAAAAAGAAGATTATACATCAAAATGAAAGTGTTCCCAGCACTCCATGCCCTCCTTGCCCAGAACTTCTGTGGAGATCATGTGTTGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGAAAATTTATGTGGCAATCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGTCATGCCTTGGAGAACCAGTCTTCGATGAACCAGTCACTGAGAGGCGAGCCTTGTGAAAATTGTCATCTTCCTTGCCAAAAGGAAAGAGAGCCTAAATGTTCACATCACTGCCCTCAACCATGCCATCCTGGAGACTGCCCCCCATGCAAGGTGCTCATTAAACGGTCATGTCATTGTGGCGCAATGGTCCATGCTTTTGAGTGCATATATTACAACACCTTGTCTGCAAAGAGTCAAGAGACTGTCCGTTCATGCGGTGGGCCATGTCATAGAAAGTTACCAAATTGTACACATCTATGCCCAGAAATGTGTCATCCTGGTCAATGCCCAAATCCTGAGAAGTGCTGTAAAAAGGTCAATGTTCGTTGCAAATGCCAAACATTGAAAAAAGAGTGGCTTTGTCAAGATGTTCAAGCAGCCTATCATCGTTCTGGTTGCCATCCAAAAGATATACCAAAAAATCAATTTGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGTAAATCTAAAGTTTCAGAGGTAACAGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGAAAAAGGCGACAACGGGTATCGGAATCAAAGGAAATGACAAAACTACAGAAAATCATATCCAGAACAAAGCAGCTTCTTCTGTTTGTCTTTATTTTGGTCATACTTGTTGCTGCTACATATTATGGGTACAAGGGACTTTTATGGCTCTCAGATTGGATGAATGAACTTGATGAGCAAAGACAAAGATCTTCCAGAATCAGATGA 2607 0.4868 MTSSNHHLPLSDSDSDGGPSTSEALRHSDLSDSIFKSYFNFSGHSSSSATATDLSKIRSFLTSSSSGALSCLICLERIKLSDPTWSCTSLCFAVFHLICIQSWARQASDLAAARAATRLPISSDKASDTAVWNCPKCRVEYPKSHIPKTYLCFCGKLENPPSDDPWVLPHSCGDVCGRPLKHNCGHHCLLLCHPGPCPSCPQLVKVRCFCGSHQDTRRCGFKEFSCESPCSKVLDCGVHRCVEICHRGPCPPCRIRGVYSCQCGKRKEERECCDRVFRCDDPCEKKLSCGKHVCERGCHSGECGECPLQGKRTCPCGKRVYEGIPCDAPVQVCGATCDKMLPCGYHRCPERCHRGQCIETCRTVVKKCCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGACAPCPIMVTITCACGETHFEVPCGTETDQKPPRCPKPCPIKPLCRHALNCKPHKCHYGACPPCRLPCAEEFQCGHTCKLRCHGAKPPPNPEFTLKPKKKKIIHQNESVPSTPCPPCPELLWRSCVGQHIGAERMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHALENQSSMNQSLRGEPCENCHLPCQKEREPKCSHHCPQPCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNTLSAKSQETVRSCGGPCHRKLPNCTHLCPEMCHPGQCPNPEKCCKKVNVRCKCQTLKKEWLCQDVQAAYHRSGCHPKDIPKNQFGIGLIPCNSDCKSKVQVVESELQLRKSKVSEVTEPDNEKSVPKRRKRRQRVSESKEMTKLQKIISRTKQLLLFVFILVILVAATYYGYKGLLWLSDWMNELDEQRQRSSRIR. 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02210 868 Coils Coil 850 868 - -
Seca5g02210 868 SUPERFAMILY RING/U-box 69 146 - -
Seca5g02210 868 CDD NF-X1-zinc-finger 172 220 - -
Seca5g02210 868 CDD RING-CH-C4HC3_NFXL1 69 138 - -
Seca5g02210 868 CDD NF-X1-zinc-finger 333 382 - -
Seca5g02210 868 SMART znfxneu3 486 501 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 591 627 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 509 554 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 396 415 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 210 232 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 633 651 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 423 442 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 236 255 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 184 202 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 343 363 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 SMART znfxneu3 696 718 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 MobiDBLite consensus disorder prediction 1 24 - -
Seca5g02210 868 MobiDBLite consensus disorder prediction 784 809 - -
Seca5g02210 868 Pfam NF-X1 type zinc finger 417 441 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 236 254 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 396 414 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 490 500 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 509 518 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 184 201 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 289 307 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 343 361 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 591 601 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 Pfam NF-X1 type zinc finger 633 650 IPR000967 GO:0005634|GO:0008270
Seca5g02210 868 CDD NF-X1-zinc-finger 386 434 - -
Seca5g02210 868 CDD NF-X1-zinc-finger 279 326 - -
Seca5g02210 868 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 42 519 IPR034078 GO:0003700
Seca5g02210 868 MobiDBLite consensus disorder prediction 784 798 - -
Seca5g02210 868 CDD NF-X1-zinc-finger 413 461 - -
Seca5g02210 868 CDD NF-X1-zinc-finger 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02210 Seca-Chr5 62203024 62211546 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Seca5g02210 zf-NF-X1 0.0041 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02210 K15683 - gmx:100799540 1558.89