Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g02202 | ATGGGAAGAAGTGGGAAGCCTCTTCATTATAAGGGGAGCACATTCCATAGGATAATACCAAGCTTTATGGTCCAGGGGGGTGATTTCACTCTTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGACCGGGATATTTATCAATGGCCAATTCTGGGCAAGACACCAACGGCTCCCAGTTTTTCATAACAACAGTAAAAACAAGCTGGCTGGATGGACGCCATGTTGTATTTGGTAAGGTACTTTCTGGTATGGACGTTTTGTACAAGATTGAAGCACAAGGAAGTGAAAGTGGTTCGCCCAAAAGTAAGGTTGTCATAGTAGACAGTGGAGAATTAACTTCATGA | 387 | 0.4289 | MGRSGKPLHYKGSTFHRIIPSFMVQGGDFTLGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAQGSESGSPKSKVVIVDSGELTS. | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g02202 | 128 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 10 | 27 | IPR020892 | GO:0003755|GO:0006457 | |
| Seca5g02202 | 128 | Gene3D | - | 1 | 128 | IPR029000 | - | |
| Seca5g02202 | 128 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 58 | 73 | IPR002130 | GO:0000413|GO:0003755 | |
| Seca5g02202 | 128 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 15 | 27 | IPR002130 | GO:0000413|GO:0003755 | |
| Seca5g02202 | 128 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 73 | 85 | IPR002130 | GO:0000413|GO:0003755 | |
| Seca5g02202 | 128 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 86 | 101 | IPR002130 | GO:0000413|GO:0003755 | |
| Seca5g02202 | 128 | FunFam | Peptidyl-prolyl cis-trans isomerase CYP19-2 | 1 | 126 | - | - | |
| Seca5g02202 | 128 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 5 | 126 | - | - | |
| Seca5g02202 | 128 | PIRSF | Peptidylpro_ismrse | 1 | 128 | IPR024936 | GO:0003755 | |
| Seca5g02202 | 128 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 9 | 123 | IPR002130 | GO:0000413|GO:0003755 | |
| Seca5g02202 | 128 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 125 | IPR002130 | GO:0000413|GO:0003755 | |
| Seca5g02202 | 128 | SUPERFAMILY | Cyclophilin-like | 6 | 126 | IPR029000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g02202 | Seca-Chr5 | 62077449 | 62083069 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g02202 | 9 | 123 | U-box Gene Family | AT5G67530 | 47.863 | 1.07e-25 | 99.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g02202 | K01802 | - | gmx:100798499 | 246.514 |