Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02184 ATGGCTTCTTTACCAACACTACTCTTCTTCATCACCCTCACCTCCACCGTCTTCCTCCTCCTCCTCCGCAAATACCGTTACCGGCGGCTGCGTCTACCGCCGGGGAGCCTTGGTTTTCCGTTCATAGGCGAGACGTTACAGTTGATATCAGCATACAAGAGCGACAACCCGGAGCCTTTCATCGACCAGAGAGTGAACCGGTACGGTCCAATCTTCACCACACACGTTTTCGGCGAACCGACGGTTTTCTCAGCGGACCCGGAGACGAACCGGTTCATTCTCTTGAATGAAGGGAAACTCTTCGATTGCAGTTACCCCGGTTCGATATCGAACCTTCTAGGGAAGCACTCTCTCCTTCTCATGAAAGGTGCTCTTCACAAGAGAATGCATTCACTCACTATGAGCTTCGCTAACTCTTCCATCATCAAGGATCATCTTCTCCTTGACATTGACCGCCTTATCCGGCTCAACTTAGATGCTTGGTCCGACCGGGTTCTTCTCATGGAGGAGGCCAAGAAGATAACATTTGAGCTGACAGTGAAGCAGCTGATGAGCTTTGATCCAGATGAGTGGACTGAGAATCTAAGGAAAGAGTACGTTCTTGTGATTGAAGGATTCTTCACTCTCCCCTTTCCTCTCTTCTCCACCACTTACCGCAGAGCTACCAAGGTGGCAAGAAGGAAGGTGGCAGAGGCACTAACGTTGATAGTGAGGCAGAGGAGGAAAGAGAGTGAAAAAAAGAATGATATGCTTGGGGCACTGTTAGCCTCCGGCGACCACTTTTCCGACGAGGAAATAGTGGATTTTATGTTGGCTTTGCTCGTCGCCGGTTACGAAACCACCTCTACCATCATGACTCTTGCCATCAAGTTTCTCACTGAGACTCCTCAAGCCCTCACACAGCTTAAGGAAGAGCATGATCAAATCAGAGCAAGGAGTGACCCAGAGGCAGCACTGGAATGGACAGATTACAAGTCAATGGCATTTTCTCAATGCGTTGTAAATGAGACCTTAAGAGTGGCAAACATAATTGGTGGAATATTTAGGAGAGCAATGACAGACATAGACATAAAAGGTTACACTATTCCTAAGGGATGGAAGGTATTTGCATCATTCCGTGCTGTACATTTGAATCCTGAACATTTCAAAGACGCCCGCACCTTCAATCCATGGAGATGGCAGAATAACTCAGAAGCAGCAAGCCCTGGGAATGTATATACACCATTTGGAGGAGGGCCACGGCTGTGCCCTGGCTATGAACTTGCTAGAGTTGTACTTTCTGTTTTCCTTCACCGCATGGTCACCCGCTTCGGTTGGGTTCCTGCTGAGGAAGATAAGTTGGTGTTTTTCCCAACCACTAGGACACAGAAGAGGTATCCTATTATAGTGAAGCGAAGAGAGGAGTTCAGACCTTGTAATGTATAG 1425 0.4807 MASLPTLLFFITLTSTVFLLLLRKYRYRRLRLPPGSLGFPFIGETLQLISAYKSDNPEPFIDQRVNRYGPIFTTHVFGEPTVFSADPETNRFILLNEGKLFDCSYPGSISNLLGKHSLLLMKGALHKRMHSLTMSFANSSIIKDHLLLDIDRLIRLNLDAWSDRVLLMEEAKKITFELTVKQLMSFDPDEWTENLRKEYVLVIEGFFTLPFPLFSTTYRRATKVARRKVAEALTLIVRQRRKESEKKNDMLGALLASGDHFSDEEIVDFMLALLVAGYETTSTIMTLAIKFLTETPQALTQLKEEHDQIRARSDPEAALEWTDYKSMAFSQCVVNETLRVANIIGGIFRRAMTDIDIKGYTIPKGWKVFASFRAVHLNPEHFKDARTFNPWRWQNNSEAASPGNVYTPFGGGPRLCPGYELARVVLSVFLHRMVTRFGWVPAEEDKLVFFPTTRTQKRYPIIVKRREEFRPCNV. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02184 474 PRINTS P450 superfamily signature 416 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS P450 superfamily signature 276 293 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS P450 superfamily signature 332 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS P450 superfamily signature 407 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 Pfam Cytochrome P450 33 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 SUPERFAMILY Cytochrome P450 24 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 CDD CYP90-like 64 465 - -
Seca5g02184 474 FunFam Cytochrome P450 90A1 22 466 - -
Seca5g02184 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 409 418 IPR017972 GO:0005506|GO:0016705
Seca5g02184 474 Gene3D Cytochrome P450 22 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PANTHER CYTOCHROME P450 26 29 440 - -
Seca5g02184 474 PRINTS E-class P450 group I signature 406 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS E-class P450 group I signature 265 282 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS E-class P450 group I signature 285 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS E-class P450 group I signature 331 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS E-class P450 group I signature 371 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g02184 474 PRINTS E-class P450 group I signature 416 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02184 Seca-Chr5 61850518 61857091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02184 121 467 Cytochrome P450 AT5G05690 79.202 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02184 K09588 - gmx:100781291 782.326