Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02182 ATGGCCACCACCACCGCAGCCGCTGCCATGTCATACTTTTTTGGCACCCGTCTCAGTAACCCAACTTCAAACACGGGAAGATTCCACGCCTTCTTCAACTTCGGCACCAAGAAGGCACCACCACCGCCACCACCACAGAAGAAAAAGGAGGTGAAATTGAAAACCAGTGATGACCGGCTCGTGTGGTTCCCAAATGCAGAGCCACCGGAATGGCTCGACGGGTCCATGATCGGAGACCGTGGGTTCGACCCATTTGGGTTCGCGAAACCTGCTGAGTACCTACAATTCGACCTTGACTCGCTCGACCAGAACCTCGCCAAGAACGTCGCCGGCGATATAATCGGAACCAGGATCGAGACCATTGAGGTTAAACCGACGCCGTTTCAACCTTACACGGAGGTCTTCGGAATACAGAGGTTCCGTGAATGCGAGCTCATTCATGGAAGGTGGGCCATGCTTGGAGCTCTCGGTGCCTTGGCCGTTGAAGCTTTCACTGGGGTCGCATGGCAAGACGCTGGAAAGGTAGAGCTGGTGGAAGGGGCATCCTACCTGGGACTTCCTCTTCCATTCTCATTGACCACATTGATCTGGATTGAGGTGTTAGTGATTGGGTACATTGAATTTCAAAGAAATGCAGAGCTTGACCCAGAGAAAAGGTTATACCCAGGTGGCAAGTTCTTTGATCCTTTGGGCTTGGCCAATGACCCTGAAGAGAAGGCCAGACTTCAACTGGCAGAAATCAAGCACTCTCGCTTAGCTATGGTGGTCTTCCTCATCTTTGCAATTCAAGCTGCTGTAACAGGAAAAGGCCCTATCAGTTTTATTGCTACCTTCAACAAGTGA 843 0.5148 MATTTAAAAMSYFFGTRLSNPTSNTGRFHAFFNFGTKKAPPPPPPQKKKEVKLKTSDDRLVWFPNAEPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDIIGTRIETIEVKPTPFQPYTEVFGIQRFRECELIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGASYLGLPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFIATFNK. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02182 280 Gene3D Chlorophyll a/b binding protein domain 60 280 - -
Seca5g02182 280 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 13 276 IPR001344 GO:0009765|GO:0016020
Seca5g02182 280 Pfam Chlorophyll A-B binding protein 68 264 IPR022796 -
Seca5g02182 280 SUPERFAMILY Chlorophyll a-b binding protein 58 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02182 Seca-Chr5 61770485 61773221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02182 14 277 Chloroplast and Mitochondria Gene Families AT3G08940 72.075 1.99e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02182 K08915 - gmx:100820335 499.975