Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02171 ATGGCTGTGAAACCTACCAAGGCAGAGAAGAAAGTAGCCTATGACGCCAAGCTGTGTCAGCTTCTGGAGGATTACACCCAAATCCTCATTGTGGCTGCGGACAATGTAGGATCCAACCAGCTTCAGAACATCCGAAAGGGTCTACGTGGCGACTCTGTGGTGCTTATGGGTAAGAACACCATGATGAAGCGCTCTGTAAGGATCCATTCTGAGAATACCGGCAACAATGCCTTCCTCAACCTTATTCCCCTTCTTGTTGGTAATGTGGGGTTGATTTTCACAAAAGGTGACTTGAAGGAGGTTAGTGAAGAGGTTGCCAAGTATAAGGTGGGAGCTCCTGCTCGTGTTGGTTTGGTTGCACCCATTGATGTCGTTGTTCCTCCAGGCAACACTGGGCTAGACCCTTTTCAGACTTCTTTCTTCCAGGTGCTTAACATCCCTACCAAGATTAACAAGGGTACTGTGGAAATTATCACACCTGTAGAACTCATTAAAAAAGGAGACAAGGTTGGCTCATCTGAAGCTGCATTACTTGCCAAGCTTGGGATAAGGCCCTTCTCATATGGACTTGTTGTCCTTTCTGTTTATGACAATGGTTCAGTTTTTAGCCCTGAGGTTCTAGACCTGACTGAGGATGACCTCATTGAGAAGTTTGCCGTTGGTGTCTCCATGGTCACTTCACTTTCTTTGACCATCTCATACCCAACAATTGTAGCTGCACCACATATGTTTGTTAATGCCTATGAGAATGTCCTGTCTGTTGCAGTTGCAACTGACTATTCTTTCCCCCAGGCAGATAAGGTTAAGGAGTACCTGAAGGATCCTAGTAAATTTGCTGTAGCTGCTGTTGCTGCACCTGCTACTAATTCTAGCACAGCTCCGGGTACTGCTTCCAAAGAGGAGGAAAAGAAGGAAGAACCAGCGGAAGAATCTGATGATGACATGGGATTCAGTTTGTTTGATTAA 966 0.4576 MAVKPTKAEKKVAYDAKLCQLLEDYTQILIVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPFQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAVGVSMVTSLSLTISYPTIVAAPHMFVNAYENVLSVAVATDYSFPQADKVKEYLKDPSKFAVAAVAAPATNSSTAPGTASKEEEKKEEPAEESDDDMGFSLFD. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02171 321 CDD Ribosomal_P0_L10e 9 185 - -
Seca5g02171 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
Seca5g02171 321 SUPERFAMILY Ribosomal protein L10-like 8 135 IPR043141 -
Seca5g02171 321 Pfam 60s Acidic ribosomal protein 235 320 - -
Seca5g02171 321 PIRSF L10E 1 321 IPR030670 GO:0042254
Seca5g02171 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
Seca5g02171 321 Gene3D - 114 185 IPR043164 -
Seca5g02171 321 Gene3D - 6 209 IPR043141 -
Seca5g02171 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Seca5g02171 321 MobiDBLite consensus disorder prediction 285 321 - -
Seca5g02171 321 MobiDBLite consensus disorder prediction 306 321 - -
Seca5g02171 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02171 Seca-Chr5 61521520 61524179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02171 1 320 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.500 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02171 K02941 - jre:108991896 552.362