Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02165 ATGGAAGGAAAGGAGCAGGATGTTTCACTGGGAGCCAACAAATTCCCTGAGAGGCAACCCATTGGGACAGCGGCTCAGAGCCAAGACGATGGAAAGGACTACAAGGAACCACCCCCAGCACCACTGTTTGAGCCCTCCGAGCTCACATCATGGTCGTTCTACAGAGCTGGAATAGCAGAGTTCATGGCCACTTTTCTGTTTCTCTACATCACTATCTTGACGGTTATGGGCGTTAACAGATCCCCTTCCAAGTGCCAATCTGTTGGTATTCAAGGAATCGCTTGGGCTTTTGGTGGCATGATCTTCGCTCTCGTCTACTGCACAGCTGGCATCTCTGGGGGTCACATTAACCCGGCTGTGACATTCGGTTTGTTTTTGGCGAGGAAATTGTCGTTGACCAGGGCTCTGTTCTACATGGTGATGCAAGTCCTTGGTGCTATCTGTGGTGCTGGTGTGGTCAAGGGTTTCGAGGGAAAGACCTTGTATGGAAAATACAACGGTGGTGCTAACTTCGTAGCCCCTGGTTACACCAAAGGTGACGGACTTGGTGCTGAGATTGTTGGCACCTTCATTCTTGTCTACACCGTTTTCTCAGCCACAGATGCCAAGCGTAGCGCCAGAGACTCACACGTCCCTATTTTGGCACCCTTGCCAATTGGATTCGCTGTGTTCTTGGTTCACTTGGCTACCATCCCCATCACTGGAACCGGTATTAACCCTGCTAGAAGTCTCGGTGCTGCCATTATCTTCAACAAAGACCTTGGTTGGGATGATCACGTGCTGGATTTTCTGGGTTGGACCTTTCATTGGAGCAGCTCTTGCAGCGCTTTACCACCAAGTTGTAATCAGAGCCATTCCTTTCAAATCCAGTTAATTGGATCCAATGGTTGGTGA 894 0.4989 MEGKEQDVSLGANKFPERQPIGTAAQSQDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFMATFLFLYITILTVMGVNRSPSKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAICGAGVVKGFEGKTLYGKYNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHVLDFLGWTFHWSSSCSALPPSCNQSHSFQIQLIGSNGW. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02165 297 Gene3D Glycerol uptake facilitator protein. 40 276 IPR023271 -
Seca5g02165 297 NCBIfam MIP family channel protein 59 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 266 IPR034294 -
Seca5g02165 297 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 CDD MIP 55 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g02165 297 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Seca5g02165 297 MobiDBLite consensus disorder prediction 1 39 - -
Seca5g02165 297 FunFam Probable aquaporin PIP1-2 40 275 - -
Seca5g02165 297 SUPERFAMILY Aquaporin-like 47 270 IPR023271 -
Seca5g02165 297 Pfam Major intrinsic protein 47 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02165 Seca-Chr5 61415691 61417341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02165 1 290 Major Intrinsic Protein MIP AT2G45960 81.379 5.49e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02165 K09872 - gmx:100791447 503.442