Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02164 ATGGATGAGGACATGTCAGGCTTTTGCATTAGAAGTGGAAGTGTTCGTGGTAACAACAATAGTGCAAGCACTGGCACTAAGTGTGGGCGTTGGAACCCCACAACTGAACAAGTTAAGCTTTTAACTGAACTGTTCAGTTCTGGACTCCGTACTCCAAGCACTGATCAGATTCAAAAGATCTCTACTCAGCTGAGTTTTTATGGTAAGATTGAGAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAAGCTAGGGAAAGACAAAAGCGTCGTAAGGTTTCCTTTGATGATAATAAGGATGTGATTCGTAGAGAAAATTCCAACTCCAAGTCCATCAATTCTTCTTCACAAACAGATTTTGCAAAGCTCTATCAGGTTTCAGAGCCAGAGAGGGTGATTGAGACTCTTCAACTCTTCCCTTTGAACTCCTTTGGTGAATCAGAATCAAAGAATTTGAGAGTCCATGCAAATGCAATGTTTTCATACACAATGGGGGAACAAATGGATCACCCTCCATTAGATCTTCGCTTGAGTTTTATGTGA 543 0.4052 MDEDMSGFCIRSGSVRGNNNSASTGTKCGRWNPTTEQVKLLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDNKDVIRRENSNSKSINSSSQTDFAKLYQVSEPERVIETLQLFPLNSFGESESKNLRVHANAMFSYTMGEQMDHPPLDLRLSFM. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02164 180 Pfam Homeodomain 28 88 IPR001356 GO:0003677
Seca5g02164 180 Gene3D - 27 95 - -
Seca5g02164 180 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Seca5g02164 180 SMART HOX_1 26 93 IPR001356 GO:0003677
Seca5g02164 180 SUPERFAMILY Homeodomain-like 29 91 IPR009057 -
Seca5g02164 180 CDD homeodomain 30 90 IPR001356 GO:0003677
Seca5g02164 180 FunFam WUSCHEL-related homeobox 11 27 95 - -
Seca5g02164 180 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 109 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02164 Seca-Chr5 61370540 61371695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02164 8 180 Wox Gene Family AT3G11260 54.211 3.28e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca5g02164 Homeodomain 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02164 - - pvu:PHAVU_008G226100g 273.092