Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02162 ATGTCTTCTGCTTCTTCTTGTGCACTCACTATCCTCCAAAAATGCACTGTTTCCCCTCACCAGAAATCCACTTTGGGAGACCTCAAGCTTTCTATCTCAGACCTTAACATGCTTTGCTGTCACTACATCCAAAAGGGTTGTCTCTTCACCACACCACCACTTCCCTCTCACACTCTCATTCCCCACCTCCTCACCTCTCTCTCTCGCACCCTCTCTCTCTTCCCACCACTCGCTGGCCGCTTCATAACCGACTCAGACGGTTACATCTACATCACATGCAACGACGCCGGCGTTGATTTCATCCACGCCGCCGCCACTGACCTCACCATCGCCGACCTCTTGTCCCCACCCGATGTCCCTCAAGTTCTCATCAAGGAACTCTTCCCTTTCCACCGCAAAATCAACTACACTGCACATTCCTCCCCTATCATGGCCGTTCAGGTCACTGAACTCGCCGACGGAATCTTCATCGGCTGCGCCATCTGCCACGCCGTCGTCGACGGAACCTCCCTCTGGAACTTCTTCAATACCTTTGCCGAAGTTTCCAGGGGAGTCACGCGTGCCTCCAATGTCCCGGACTTCCGCCGGGAATCTATTCTGGTCTCCAAGGTCGCGCTCCGGTTGCCGGAAGGTGAACTCAAGGTGAAGTTCAACGCCGACGAGCCCTTGCGTGAAAGGATTTTCAGCTTCAGCCGTGAATCAATTCAGAAGCTGAAAGCCAGAGTGAACCACCGGTCATTTCCGGAGAACGTCGACAACACTGTTGAGTTGGTGGGGAAGATGAGCAACGATCCTCAACAGAAAACAGTTACGAGCAACGAAACGGTTACGAAAAACGTAACCGTTCAAACGACAGAGATTTCATCGTTTCAGTCACTGTGCGCGCTGACGTGGCGCTGCGTGACGCGTGCGAGGAACTTAGAGGGATCGAAAACGACGACGTTTAGAATGGCGGTGAATGTTAGGCAGCGTTTGGAGCCAAAGTTGGGAGAGTACTACTTCGGGAACGCGATTCAGAGCATTGCAACGTGTGCTGCCGTGGGAGACGTGGTGTGTGGGGATTTGCGGTGGTGCGCGGAGGAGCTGAACAAGAACGTGAAGGCGTATGATAGCTCTATCGTGCGGCGCGTTGTAGAGAATTGGGAGCGCGAGCCGAAGATCTTCGAGCTAGGGAACCACGACGGTGCAACGGTGCAGATGGGAAGCTCGCCGAGATTCCCAATGTATGACAATGATTTTGGATGGGGGAAGCCCTTCGCGGTGCGGAGCGGCGGAGCCAACAAGTTTGATGGGAAGATCTCGGCGTTCCCGGGGAGGAAAGGCGGCGGAGCCGTCGATTTGGAGATGGTTTTGGCGCCGCAAACGATGGCGCGGCTCGAGTCTGATCCTGAGTTCATGCTTTTTGCGTCAGCTCAAGCATGA 1422 0.5443 MSSASSCALTILQKCTVSPHQKSTLGDLKLSISDLNMLCCHYIQKGCLFTTPPLPSHTLIPHLLTSLSRTLSLFPPLAGRFITDSDGYIYITCNDAGVDFIHAAATDLTIADLLSPPDVPQVLIKELFPFHRKINYTAHSSPIMAVQVTELADGIFIGCAICHAVVDGTSLWNFFNTFAEVSRGVTRASNVPDFRRESILVSKVALRLPEGELKVKFNADEPLRERIFSFSRESIQKLKARVNHRSFPENVDNTVELVGKMSNDPQQKTVTSNETVTKNVTVQTTEISSFQSLCALTWRCVTRARNLEGSKTTTFRMAVNVRQRLEPKLGEYYFGNAIQSIATCAAVGDVVCGDLRWCAEELNKNVKAYDSSIVRRVVENWEREPKIFELGNHDGATVQMGSSPRFPMYDNDFGWGKPFAVRSGGANKFDGKISAFPGRKGGGAVDLEMVLAPQTMARLESDPEFMLFASAQA. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02162 473 Gene3D - 209 461 IPR023213 -
Seca5g02162 473 Gene3D - 9 207 IPR023213 -
Seca5g02162 473 SUPERFAMILY CoA-dependent acyltransferases 51 187 - -
Seca5g02162 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 466 - -
Seca5g02162 473 Pfam Transferase family 9 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02162 Seca-Chr5 61326639 61328060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02162 33 460 Monolignol Biosynthesis Gene Families AT5G48930 27.002 7.15e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02162 - - cam:101506439 702.975