Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02147 ATGGATCTTGAGACTCTGTATCGATCTTGTTTTGCGTCAAATTCAAATTGGTTTGTTGAAGAGATGCACAGCACAGAATGGACTAGAGAAGAGGACAAACAATTTGAAAGTGCCATTGCCAAATATGGTAATAATACCCCCGATTGGGAAATGGTGGCAGCCATGTTCCCTGGGAAAACTGTCCTTGATGTGATGAAGCACTATGAGAAATGGGTAGAAGATATGGATGATATAGAAGCAGGGCGGGTTCCAATTCCTGCATATCTCACGGGGACGGTTGAGGGTCATGATGGATGCAAAAAGAGGCATGCAACTTCCATGGGTGCTTCTCATCAGGACAGGAAGAAAGGGGTTCCTTGGACAGCAGAGGAGCACAAAAGTTTTTTGATGGGACTTGACAAGTATGGCAAAGGGAATTGGAGTAATATTGCTCGCCATTGTGTAATCACAAAGACTCCTGTCCAAGTGGCAAGCCATGCTCAAAAGTACTATATTAGGCTAAAGCATTCTAGAGGGAAAGATAATAAAATGAGGTCTAGTATCCTTGATATCACCACTGATAATCTTAAAGAATCTACAACTAATTCAGGTCAAGACAAGCCTATTTTGTTCAATGAGTATCACATGTCAAATGTGCAACCAGAATGGATTAATCACCACAATGAAGAGCCACTCATGGAGGCTCTCAACCCAAATTATGATGATATGTTCATGTCTCCCTCATCTGACATCAATTCCCAGACCCTCAAGTTTCAAGGTCAGCAGGATCTATACGAATGCCTTTTTCATCATGCTTATACCCCGCAAAATGCTCAAGGTTTCAGAACTGCTTCTAATGACAGCAATAAGGACTCTGTTTTGGATACTATTCATGCACTGTGA 882 0.4184 MDLETLYRSCFASNSNWFVEEMHSTEWTREEDKQFESAIAKYGNNTPDWEMVAAMFPGKTVLDVMKHYEKWVEDMDDIEAGRVPIPAYLTGTVEGHDGCKKRHATSMGASHQDRKKGVPWTAEEHKSFLMGLDKYGKGNWSNIARHCVITKTPVQVASHAQKYYIRLKHSRGKDNKMRSSILDITTDNLKESTTNSGQDKPILFNEYHMSNVQPEWINHHNEEPLMEALNPNYDDMFMSPSSDINSQTLKFQGQQDLYECLFHHAYTPQNAQGFRTASNDSNKDSVLDTIHAL. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02147 293 CDD SANT 119 163 IPR001005 -
Seca5g02147 293 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 263 IPR043363 -
Seca5g02147 293 CDD SANT 26 72 IPR001005 -
Seca5g02147 293 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Seca5g02147 293 Gene3D - 118 169 - -
Seca5g02147 293 Gene3D - 19 85 - -
Seca5g02147 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 168 IPR017930 -
Seca5g02147 293 SMART sant 116 166 IPR001005 -
Seca5g02147 293 SMART sant 23 74 IPR001005 -
Seca5g02147 293 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Seca5g02147 293 FunFam transcription factor MYB1R1 118 169 - -
Seca5g02147 293 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Seca5g02147 293 ProSiteProfiles Myb-like domain profile. 19 72 IPR001005 -
Seca5g02147 293 ProSiteProfiles SANT domain profile. 24 76 IPR017884 -
Seca5g02147 293 FunFam Transcription factor SRM1 19 85 - -
Seca5g02147 293 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Seca5g02147 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 115 166 IPR006447 GO:0003677
Seca5g02147 293 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Seca5g02147 293 Pfam Myb-like DNA-binding domain 119 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02147 Seca-Chr5 60841621 60843255 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g02147 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02147 - - gmx:100783469 315.849