Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02134 ATGGCACCCAACAAACCCATTATCAACATCTCTAGTGACTCTGAAAGTGAAAACGAACGTGAAAGTGACCCTAACTCCTGGGTAGCAAGCATGACAAAGGAAAAGTCTTCCGGCTTGCAAACTCTGTATGTCCCTAAGAGAATCAAAGATACATGGTTTGCACATGAGTCGGATTTAATGTTCGTCAAGTATGAGGACGATCCACAGGAAGACTGGGAGTTGATGTGGCACAAAGACCATCGTGTGTGCCTCATAGGACACGGATGGTACGAGTTTTGCAAATACCATAACCTCAAGACAAACGATCAGGTTACTTTCACAAAACCACCAGATTCCTACGTTGTTACTGTCACTATCCAGAGAAAGCGTTCTTAG 375 0.44 MAPNKPIINISSDSESENERESDPNSWVASMTKEKSSGLQTLYVPKRIKDTWFAHESDLMFVKYEDDPQEDWELMWHKDHRVCLIGHGWYEFCKYHNLKTNDQVTFTKPPDSYVVTVTIQRKRS. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02134 124 MobiDBLite consensus disorder prediction 1 34 - -
Seca5g02134 124 Pfam B3 DNA binding domain 28 108 IPR003340 GO:0003677
Seca5g02134 124 ProSiteProfiles B3 DNA-binding domain profile. 27 123 IPR003340 GO:0003677
Seca5g02134 124 Gene3D - 10 123 IPR015300 -
Seca5g02134 124 SUPERFAMILY DNA-binding pseudobarrel domain 21 121 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02134 Seca-Chr5 60707781 60708534 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca5g02134 B3 6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02134 - K26528 lja:Lj6g3v0497350.1 68.5514