Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02126 ATGTCGGTTGCAGAGGACAAGTCTCAGTCTCACGTTGTCGTTGTTGTCGTCGGTGACATTGACAATGCCAATGGTTGTCCTCGGAGCATTGTCAGCGGCGAAGGGAGTTCTGAGACCGGTGAGCGATTAGATGAGGAACAAAGGTGTTGTTCCAAGGAGTGTGGTCCTGAGATTGTGGGAGTGTCCGAAAAACAGAGGAGATCCTCTGTTTCTGAGTGTTGTGTGGATGTGGATCTGGACAATGCTGTGCCTGATGACAAGGTACATTTGGCTAAGGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACCAATCATGACCATGAATCTGGAACTCCCATTGAACTTGGATGTTCTTGCAAAGATGATTTAGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCACACAATGTAGCTGGTGTAATTGAAGTTGAGATGACAGAACAGTGGAATGAAACAAATGATGCCTCCAATGTACCACCAACTGGACCAGCTCCCCCGGCAGAAACTAGGAGTTTCTGGCAGGGTCACCGGTTCTTGAATTTTCTTCTTGCCTGTATGGTATTTGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTGCCCTCATGA 669 0.4679 MSVAEDKSQSHVVVVVVGDIDNANGCPRSIVSGEGSSETGERLDEEQRCCSKECGPEIVGVSEKQRRSSVSECCVDVDLDNAVPDDKVHLAKVERDCRICHLSMDMTNHDHESGTPIELGCSCKDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGVIEVEMTEQWNETNDASNVPPTGPAPPAETRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02126 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 158 IPR013083 -
Seca5g02126 222 SUPERFAMILY RING/U-box 94 153 - -
Seca5g02126 222 ProSiteProfiles Zinc finger RING-CH-type profile. 89 157 IPR011016 GO:0008270
Seca5g02126 222 PANTHER ZINC FINGER, RING-CH-TYPE 36 221 - -
Seca5g02126 222 SMART ringv_2 96 151 IPR011016 GO:0008270
Seca5g02126 222 Pfam RING-variant domain 97 150 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02126 Seca-Chr5 60450239 60453000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02126 61 222 C3H Transcription Factor Family AT5G05830 66.258 3.40e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02126 - - gmx:100818979 318.161