Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02078 ATGGCTCCTAATTCAGATATCAATCATCTTTCTCACCCTTGCATATATGGGGATTTTGTTTCTTCATATTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAGTAGAGGAAGAAGTGGTGGTCGTAATCTACAGCAACCTGCGGAGGAAAACATGGTTTGGCGAGCTCCAGCTAGATCATTGGGTGACCGTGCTAGATCTCAGAAGGAGGAAGATGATCTCAATCATGCAATGGCACTTTCATTAGGCGAAGGTATAAAGAGACCAACTGGATACAGATGGCGGACAGGAACTGAAGAAGACTATGATAAGGCACTTCAGGATCGCATGCACTCATCTGCATACCCTCCATATGCCCCTTTACCTTTTTATCCCCGGGGATATGGTATGCCATCACATATCAGAGTATGTGGAGGGTGCAACCAGGAGATACTCTATGGCAATTGTTTGGGAGTTGAGAATAGCTATTTTCATCCAGACTGTTTTCGGTGTCACTCTTGTCATTACCCTATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAATTAACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATTCTGCTGGTTTAATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAGTATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCTCGGGGTGAAAGATACTATAGATTGGATGATGGAAGGATTTTGTGCTTTGAATGTATGGAATCTGCCATAACAGATACTGGTGAATGTCAGCCTCTTTATCATGCCATCAGAGACTATTATGAAGGAATGAATATGAGAATAGATCAACAAGTCCCCATGCTTCTTGTTGGGAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGGCTTCCATCACTTGCCAGAAACAAGGGGCTTGTGCCTTTCAGAAGAGCAGACTGTCACCAGTGTACATAGATGGCCAATAATTGGAGGCCATCGATTAATAGGGATGAGAACTCAACCTCATAGGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCGCAACCTTGATCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAAGTGATGGCAGGTTCTAGAACCATGCCATCAACATCAGCAGCTTCTTCTTCATCCTCCTCCTCTTCCTCCTACTCATCAAAGAAAGGTGTGAAATCTAAAGTTGAAAATAAGTTGGGTGAATTTTTCATGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGGTTTAGAGCAGCTAATGCAGCTGTGAATAAATATGGTTTACGTTGTACTCTGGAGCATATTCGTTTGACTGGTCAGTTCCCACTGTAA 1536 0.4212 MAPNSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSSRGRSGGRNLQQPAEENMVWRAPARSLGDRARSQKEEDDLNHAMALSLGEGIKRPTGYRWRTGTEEDYDKALQDRMHSSAYPPYAPLPFYPRGYGMPSHIRVCGGCNQEILYGNCLGVENSYFHPDCFRCHSCHYPITEREFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINSAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPIIGGHRLIGMRTQPHRLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDPEVEEGICQVLSYMWLDAEVMAGSRTMPSTSAASSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRAANAAVNKYGLRCTLEHIRLTGQFPL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02078 511 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Seca5g02078 511 Pfam LIM domain 145 198 IPR001781 -
Seca5g02078 511 SMART lim_4 144 196 IPR001781 -
Seca5g02078 511 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Seca5g02078 511 CDD LIM 172 236 - -
Seca5g02078 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Seca5g02078 511 PANTHER PROTEIN DA1-RELATED 2 33 510 IPR045218 -
Seca5g02078 511 CDD LIM_DA1 145 197 - -
Seca5g02078 511 Gene3D Cysteine Rich Protein 140 202 - -
Seca5g02078 511 Pfam Protein DA1 294 506 IPR022087 -
Seca5g02078 511 MobiDBLite consensus disorder prediction 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02078 Seca-Chr5 59460111 59465636 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca5g02078 DA1-like 7.1e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02078 - - gmx:100793901 938.717