Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02073 ATGAAGGCACTGATTCTGGTTGGAGGGTTTGGAACAAGATTGAGGCCATTGACACTCAGTGTTCCGAAGCCTCTTGTTGATTTTGCTAACAAGCCAATGATCCTGCATCAGATAGAGGCTCTTAAGGCCATTGGAGTTAATGAAGTGGTACTTGCTATCAATTACCAACCAGAAGTAAGATTGGTGATGTTGAATTTCTTGAAGGATTTTGAGGCAAAGCTCGGCATCAAAATCACTTGTTCTCAAGAAACTGAACCACTGGGGACTGCAGGTCCATTGGCTCTTGCCAGGGATAAGCTGATTGATGACTCTGGTGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGAAATGATTGAATTCCACAAAGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTCGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAGACTACCGGGCAGGTTGAGAAATTTGTGGAAAAACCAAAATTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAGAAAGAGGTGTTTCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGACACTCTACCTGGACTCACTGAGGAAAAATAGTCCTTCTAAGTTAGCTAGTGGCCCTCATATTTTGGGGAATGTCATTGTGCATGAGACTGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCAATTGGTCCTGGCTGTATTGTTGAGTCAGGTGTCAGGCTTTCACGCTGCACAGTAATGCGAGGAGTTCGGATTAAAAGCCACGCTTGCATATCCAGCAGTATCATTGGGTGGCATTCCACTGTTGGACAGTGGGCTCGTGTGGAGAATATGACTATCCTTGGTGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTAGTTTTGCCCCACAAGGAGATCAAGTCAAGCATTCTGAAGCCAGAGATAGTCATGTGA 1095 0.442 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVRLVMLNFLKDFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYISGLTLYLDSLRKNSPSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKSHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02073 364 FunFam mannose-1-phosphate guanyltransferase beta 1 235 - -
Seca5g02073 364 CDD M1P_guanylylT_B_like_N 1 237 IPR045233 GO:0004475|GO:0005525|GO:0009298
Seca5g02073 364 Pfam Nucleotidyl transferase 2 232 IPR005835 GO:0009058
Seca5g02073 364 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 315 IPR029044 -
Seca5g02073 364 Gene3D Hexapeptide repeat proteins 241 359 - -
Seca5g02073 364 Pfam Bacterial transferase hexapeptide (six repeats) 264 298 IPR001451 -
Seca5g02073 364 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 234 IPR029044 -
Seca5g02073 364 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02073 Seca-Chr5 59297262 59302471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02073 1 188 Eukaryotic Initiation Factors Gene Family AT4G18300 23.153 3.01e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02073 K00966 - gmx:100818016 693.345