Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02071 ATGATGACAGTGAGCATGCACTGCTCTGCTCTCCCACCAATGGAATCATCCACGACGAGGCTCCTCCTCGTGACGGCGGCGCAACTGCTGCTAACATGCGCTACACACGTGATGTCCGCAACGCCGTGTCCTCCGTGCGGCAACACCACGGTGCCCTTCCCTCTCAGCACCACCGCCACGTGCGGCGACCCGTCGTACAAAGTCTGGTGCACCTCCTCCGGCACGCTTATGTTCGACACGCTCAACAACTCGTACCCGATCGAGTCGATTAACCCGAAAACCCAGCGCTTCGTGATCCAACCCGCTCCAATTATACCCAACACGTGCGTGTCCACCGATAAGGTCCACCAGGGGATCCAACTGAACAACACGCTACCTTTCAACATCACGAGCTCCAACACCATCGTTTATCTCAATTGTACCCTCACGCTCCTTCAGTCACCGCTCAATTGCTCCTCCGCCAGTGTCTGCCATGCTTACATCAACGCCACCGCCTCCGCCTCTGCGTGCCAGGCCGGTCCACTCTGCTGCACCTACCGAACCGGTGGGTCCAGTAACTCCTACATGATACGGGTCAGAGACTCCGGTTGTAGTGCTTACTCAAGCTTCGTGAACCTTGATCCGGGTTCACCAGTGAACCGCTGGCCCCAACCCGGTTTGGAGATTCAGTGGCTGTCGCCTAGAGAAACGGCTTGTGGGTCCCAGGGAGATTGTGATGCTGCCACGTCGACTTGTGGGCCCGATACATCCTCCTCCAATGGGATCAGGAGGTGCTTCTGTAACAGTGGGCTTGTGTGGGACCCTGTTCAAGGGGTGTGCACTCAAAGAATTACTTGCCAGAACCCGGATGGTTGCGACGACTCAACTAACAAAACAACATTAATAGCAGGTTTAATATGCGGGATTGGAGGTGTACTCATCTTTGCCACCATTGCTGTTCTGCTCTACAAACGGAACAAACGCATTAGAGAAGCACGAGAACGCTTAGCCAAGGAACGTGAAGGAATTCTGAATGCTAGTGGTGGGAGCAGAGCAGCTAAACTTTTTACTGGCAAAGATATAAAGAAAGCTACCAAGGACTTCTCCAGTGATCGTCTTCTTGGTGTTGGTGGGTATGGTGAAGTGTACAAGGGCATTCTTGAAGATGGCACTGTTGTTGCTGTCAAGTGTGCTAAGCTTGGAAACGCCAAAGGCACTGATCAAGTCCTTAATGAGGTTCGCATATTATGCCAAGTCAACCACCGCAACCTTGTTGGTCTACTTGGTTGCTGTGTGGAATTGCAGCAACCCATTTTGGTTTATGAGTTCATTGAAAATGGGACACTTGGTGATCATTTGCAAGGTGAAGTGCCTAAGGGGCGTGCCATGCTTACCTGGATTCATCGCCTTCTCATTGCCCGTGACACAGCTGAAGGTCTTGCTTACCTTCACTTCATGGCTGTGCCTCCTATATACCATAGAGATGTCAAGTCTAGCAACATTCTGCTAGATTTCAAGATGAATGCCAAGGTTGCAGATTTTGGGTTATCTAGGCTGGCTCAAACAGATATGAGTCATATCACTACTTGTGCTCAGGGGACCCTTGGGTACCTTGATCCTGAATATTACAGGAACTACCAATTGACTGATAAGAGTGATGTTTACAGTTTTGGGGTGGTGCTGCTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGCCACCAGATGATGTGAACTTGGCAGTTTATGTGCAGCGGATGGTGGAGGAAGAAAAGATGATGGATGTCATTGATCCAATGTTGAAAAGTGGAGCTACTGCTATTGAGTTGGAAACGATGAAGGCATTGGCATTTCTGGCATTGGGTTGTTTGGAGGAAAAGAGACAGAATCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCATCGGCAAAGGAGGTGGTGGTGGAGAAGTAG 1959 0.5013 MMTVSMHCSALPPMESSTTRLLLVTAAQLLLTCATHVMSATPCPPCGNTTVPFPLSTTATCGDPSYKVWCTSSGTLMFDTLNNSYPIESINPKTQRFVIQPAPIIPNTCVSTDKVHQGIQLNNTLPFNITSSNTIVYLNCTLTLLQSPLNCSSASVCHAYINATASASACQAGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLDPGSPVNRWPQPGLEIQWLSPRETACGSQGDCDAATSTCGPDTSSSNGIRRCFCNSGLVWDPVQGVCTQRITCQNPDGCDDSTNKTTLIAGLICGIGGVLIFATIAVLLYKRNKRIREARERLAKEREGILNASGGSRAAKLFTGKDIKKATKDFSSDRLLGVGGYGEVYKGILEDGTVVAVKCAKLGNAKGTDQVLNEVRILCQVNHRNLVGLLGCCVELQQPILVYEFIENGTLGDHLQGEVPKGRAMLTWIHRLLIARDTAEGLAYLHFMAVPPIYHRDVKSSNILLDFKMNAKVADFGLSRLAQTDMSHITTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRPPDDVNLAVYVQRMVEEEKMMDVIDPMLKSGATAIELETMKALAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKEVVVEK. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02071 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Seca5g02071 652 Gene3D Phosphorylase Kinase; domain 1 323 436 - -
Seca5g02071 652 Gene3D Transferase(Phosphotransferase) domain 1 437 650 - -
Seca5g02071 652 FunFam Wall-associated receptor kinase-like 20 437 649 - -
Seca5g02071 652 FunFam Wall-associated receptor kinase-like 20 323 436 - -
Seca5g02071 652 ProSiteProfiles Protein kinase domain profile. 361 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02071 652 CDD STKc_IRAK 367 637 - -
Seca5g02071 652 Pfam Wall-associated receptor kinase galacturonan-binding 43 99 IPR025287 GO:0030247
Seca5g02071 652 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Seca5g02071 652 SMART serkin_6 361 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02071 652 SUPERFAMILY Protein kinase-like (PK-like) 344 636 IPR011009 -
Seca5g02071 652 Pfam Protein tyrosine and serine/threonine kinase 364 635 IPR001245 GO:0004672|GO:0006468
Seca5g02071 652 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 32 639 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02071 Seca-Chr5 59263356 59268551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02071 21 646 Receptor kinase-like Gene Family AT5G02070 50.774 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca5g02071 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02071 - - gmx:100305415 1076.62