Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02057 ATGGCTGGGATGTGTTGTGGTGTTGTTGGAGAGGGTGAGACTCCGGCGAGTTCACGCCCCTCCAGGCGCCGGAGTTTGGACCTTATTTCCTTCAAATACATGGCCGACGTGGCAGTGCCGGAGTCTTCCCGGAAACGACAGAAGCTGGATCTCCGTGGTCCCAGGGATTACGAAAACGCAGTTGAAAATCGTGATGAATCAAACGGTGGCTGCTCCCAAAAGGAGGAGGAGGAGGAGGAGGAGAAAGAATCCAAAGTAAACGACGAAGTCGTTTCCGAAGCCAAACTCTCGTCCGTTTCTGAGGCTAATTTAGAAGTTGAAGAGTGTCCAAAGTTTGGCGTGACGTCCGTTTGTGGAAGAAGAAGGGACATGGAAGATTCCGTTTCGGTTCGCCCTTCCTTCTCCGAACAAAGCTTTCACTTCTTCGGTGTTTTCGACGGTCACGGTTGCTCTCATGTTGCAACCATGTGCAAGGAGAGGCTTCACGAGATTGTGCAGGAAGAGATTCACGAAGCTAAAGAGAATTTAGAATGGAAGAACACGATGAAGCAAGGTTTCGCTCGCATGGATGACGAGGTTCTGCGATGGAACCAGAACAATCAAACCTTCAGTTGCAGGTGCGAGCTTCAGACACCTCACTGCGACGCCGTCGGATCCACCGCCGTCGTTGCCGTCGTCACTCCGGATAAGGTCGTCGTCTCTAACTGCGGCGACTCTCGCGCTGTCCTCTGCCGAAACGGCGTCGCAATCCCCCTCTCGGACGATCACAAGCCGGACCGACCCGACGAATTGCTCCGGGTCCAAGAGGCTGGAGGGCGCGTGATCTTTTGGGATGGGCCAAGAGTGCTTGGGGTGCTGGCCATGTCAAGAGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCGGAGCCTGAAGTGACGGTAACGGAGCGGAAGGATGGGGATGAGTGTTTGATACTAGCGAGTGATGGGTTATGGGACGTGGTGTCAAACGACACCGCATGTGGAGTGGTGAGGATGTGTCTCAAGGCGCAGAAGGTGCCGTCGCCGCCGGGGTCTCCCGGCAGTGACCTGACGGCGGACGGTTCTGACCGGGCATGCTCCGATGCGTCCATTCTCCTGACTAAGTTGGCGTTGGCGAGGCACAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGGGATCAACGAAAATCTTCCTCGAATTCGAACAACGTTTAA 1230 0.5439 MAGMCCGVVGEGETPASSRPSRRRSLDLISFKYMADVAVPESSRKRQKLDLRGPRDYENAVENRDESNGGCSQKEEEEEEEKESKVNDEVVSEAKLSSVSEANLEVEECPKFGVTSVCGRRRDMEDSVSVRPSFSEQSFHFFGVFDGHGCSHVATMCKERLHEIVQEEIHEAKENLEWKNTMKQGFARMDDEVLRWNQNNQTFSCRCELQTPHCDAVGSTAVVAVVTPDKVVVSNCGDSRAVLCRNGVAIPLSDDHKPDRPDELLRVQEAGGRVIFWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERKDGDECLILASDGLWDVVSNDTACGVVRMCLKAQKVPSPPGSPGSDLTADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRKSSSNSNNV. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02057 409 Gene3D - 106 405 IPR036457 -
Seca5g02057 409 SMART PP2C_SIG_2 123 395 IPR001932 -
Seca5g02057 409 SMART PP2C_4 99 393 IPR001932 -
Seca5g02057 409 Pfam Protein phosphatase 2C 112 387 IPR001932 -
Seca5g02057 409 MobiDBLite consensus disorder prediction 1 24 - -
Seca5g02057 409 ProSitePatterns PPM-type phosphatase domain signature. 141 149 IPR000222 GO:0043169
Seca5g02057 409 ProSiteProfiles PPM-type phosphatase domain profile. 111 395 IPR001932 -
Seca5g02057 409 CDD PP2Cc 111 348 IPR001932 -
Seca5g02057 409 SUPERFAMILY PP2C-like 111 396 IPR036457 -
Seca5g02057 409 MobiDBLite consensus disorder prediction 40 71 - -
Seca5g02057 409 PANTHER PROTEIN PHOSPHATASE 79 395 IPR015655 GO:0004722|GO:0006470
Seca5g02057 409 MobiDBLite consensus disorder prediction 40 93 - -
Seca5g02057 409 FunFam Protein phosphatase 2C 37 106 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02057 Seca-Chr5 59105295 59106872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02057 84 401 PP2C-type Phosphatase Gene Family AT1G07430 59.770 1.22e-142 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02057 K14497 - gmx:100776356 602.438